Sequence Similarity Clusters for the Entities in PDB 1KSG

Entity #1 | Chains: A
arf-like protein 2 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 28282
95 % 3 6 10600 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.1
PDBFlex
90 % 3 6 10457
70 % 3 6 9921
50 % 10 14 3489
40 % 45 80 301
30 % 562 793 16
Entity #2 | Chains: B
RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC PHOSPHODIESTERASE DELTA-SUBUNIT protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 22 1598
95 % 23 24 1809 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 23 24 1847
70 % 23 24 1876
50 % 23 24 1902
40 % 23 24 1904
30 % 23 24 1836

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.