Sequence Similarity Clusters for the Entities in PDB 1KSG

Entity #1 | Chains: A
arf-like protein 2 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 28786
95 % 3 6 10760 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.1
PDBFlex
90 % 3 6 10613
70 % 3 6 10076
50 % 10 14 3555
40 % 45 80 313
30 % 582 817 16
Entity #2 | Chains: B
RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC PHOSPHODIESTERASE DELTA-SUBUNIT protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 22 1633
95 % 23 24 1846 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 23 24 1887
70 % 23 24 1922
50 % 23 24 1940
40 % 23 24 1946
30 % 23 24 1875

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures