Sequence Similarity Clusters for the Entities in PDB 1KRP

Entity #1 | Chains: B
DNA (5'-D(P*TP*TP*PST)-3') dna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
PROTEIN (DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7)) protein, length: 605 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 14 4771
95 % 4 14 5090 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.9
PDBFlex
90 % 4 14 5116
70 % 4 14 4974
50 % 4 14 4737
40 % 4 14 4460
30 % 4 14 4027

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures