Sequence Similarity Clusters for the Entities in PDB 1KRP

Entity #1 | Chains: B
DNA (5'-D(P*TP*TP*PST)-3') dna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
PROTEIN (DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7)) protein, length: 605 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 10 5949
95 % 4 14 4569 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.9
PDBFlex
90 % 4 14 4593
70 % 4 14 4499
50 % 4 14 4323
40 % 4 14 4123
30 % 4 14 3810

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.