Sequence Similarity Clusters for the Entities in PDB 1KQS

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: F
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 21 2091
95 % 4 21 2709
90 % 45 68 642
70 % 45 68 682
50 % 63 104 303
40 % 70 118 276
30 % 70 120 284
Entity #11 | Chains: G
RIBOSOMAL PROTEIN L10 protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 44 773
95 % 43 64 656
90 % 43 64 687
70 % 43 64 726
50 % 43 64 783
40 % 43 64 810
30 % 43 65 800
Entity #12 | Chains: H
RIBOSOMAL PROTEIN L10E protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 20 2283
95 % 3 20 2899
90 % 3 20 2945
70 % 4 27 2023
50 % 45 74 653
40 % 45 79 645
30 % 45 79 660
Entity #13 | Chains: I
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 74 345
95 % 45 74 509
90 % 45 74 545
70 % 45 74 584
50 % 45 74 657
40 % 46 77 667
30 % 46 78 667
Entity #14 | Chains: J
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 44 786
95 % 45 68 607
90 % 45 68 641
70 % 45 68 681
50 % 46 163 208
40 % 46 163 229
30 % 68 479 31
Entity #15 | Chains: K
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 74 344
95 % 45 74 508
90 % 45 74 542
70 % 45 74 580
50 % 45 74 654
40 % 45 74 700
30 % 67 468 38
Entity #16 | Chains: L
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 20 2266
95 % 3 20 2879
90 % 3 20 2927
70 % 45 68 675
50 % 46 159 215
40 % 46 159 237
30 % 46 159 249
Entity #17 | Chains: M
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 74 342
95 % 45 74 506
90 % 45 74 538
70 % 45 74 576
50 % 45 76 634
40 % 45 76 678
30 % 45 79 657
Entity #18 | Chains: N
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 68 418
95 % 45 68 609
90 % 45 68 643
70 % 45 68 683
50 % 45 70 705
40 % 45 70 746
30 % 45 70 750
Entity #19 | Chains: O
RIBOSOMAL PROTEIN L19E protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 21 2083
95 % 45 68 605
90 % 45 68 640
70 % 45 68 680
50 % 45 68 733
40 % 45 72 717
30 % 45 72 719
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: P
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 68 420
95 % 45 68 612
90 % 45 68 645
70 % 45 68 686
50 % 45 70 707
40 % 45 70 748
30 % 45 71 735
Entity #21 | Chains: Q
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 67 431
95 % 45 68 603
90 % 45 68 638
70 % 45 68 678
50 % 45 68 731
40 % 45 68 765
30 % 46 162 241
Entity #22 | Chains: R
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 74 351
95 % 45 74 514
90 % 45 74 551
70 % 45 74 589
50 % 45 76 636
40 % 45 78 657
30 % 66 388 57
Entity #23 | Chains: S
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 74 349
95 % 45 74 512
90 % 45 74 548
70 % 45 74 588
50 % 46 167 203
40 % 46 167 224
30 % 46 167 232
Entity #24 | Chains: T
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 70 397
95 % 43 70 579
90 % 43 70 617
70 % 43 70 654
50 % 43 70 708
40 % 43 70 750
30 % 43 70 753
Entity #25 | Chains: U
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 74 352
95 % 45 74 515
90 % 45 74 552
70 % 45 74 590
50 % 45 74 659
40 % 45 74 703
30 % 45 74 702
Entity #26 | Chains: V
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 68 412
95 % 45 68 604
90 % 45 68 639
70 % 45 68 679
50 % 45 68 732
40 % 45 70 742
30 % 45 71 733
Entity #27 | Chains: W
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 68 422
95 % 45 68 614
90 % 45 68 647
70 % 45 68 688
50 % 45 68 738
40 % 45 68 769
30 % 45 68 773
Entity #28 | Chains: X
RIBOSOMAL PROTEIN L32E protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 63 475
95 % 42 63 675
90 % 42 63 705
70 % 42 63 747
50 % 42 63 797
40 % 42 63 824
30 % 42 63 821
Entity #29 | Chains: Y
RIBOSOMAL PROTEIN L37Ae protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 20 2343
95 % 3 20 2947
90 % 3 20 2990
70 % 4 21 2737
50 % 9 30 1830
40 % 10 116 322
30 % 31 139 281
Entity #3 | Chains: 3
CCA rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #30 | Chains: Z
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 68 423
95 % 45 68 615
90 % 45 68 648
70 % 45 68 691
50 % 45 69 719
40 % 45 69 758
30 % 45 69 764
Entity #31 | Chains: 1
RIBOSOMAL PROTEIN L39E protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 20 2349
95 % 45 68 616
90 % 45 68 649
70 % 45 68 692
50 % 46 160 213
40 % 46 160 235
30 % 46 160 247
Entity #32 | Chains: 2
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 68 421
95 % 45 68 613
90 % 45 68 646
70 % 45 68 687
50 % 45 68 737
40 % 45 68 768
30 % 46 156 253
Entity #4 | Chains: 4
CC-Pmn-pcb rna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 21 2063
95 % 45 68 598
90 % 45 68 635
70 % 45 68 674
50 % 46 158 214
40 % 46 160 233
30 % 46 160 245
Entity #6 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 67 426
95 % 45 74 501
90 % 45 74 533
70 % 45 74 569
50 % 45 74 647
40 % 46 167 222
30 % 46 167 230
Entity #7 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 44 779
95 % 45 74 504
90 % 45 74 535
70 % 45 74 575
50 % 45 74 650
40 % 45 76 677
30 % 45 77 675
Entity #8 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 74 343
95 % 45 74 507
90 % 45 74 540
70 % 45 74 578
50 % 45 74 652
40 % 47 167 223
30 % 47 167 231
Entity #9 | Chains: E
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 68 411
95 % 45 68 602
90 % 45 68 637
70 % 45 68 677
50 % 45 68 730
40 % 46 161 230
30 % 68 473 36

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.