Sequence Similarity Clusters for the Entities in PDB 1KQQ

Entity #1 | Chains: B
5'-D(*CP*CP*TP*GP*TP*AP*TP*TP*GP*AP*TP*GP*TP*GP*G)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(*CP*CP*AP*CP*AP*TP*CP*AP*AP*TP*AP*CP*AP*GP*G)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DEAD RINGER PROTEIN protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67150
95 % 1 2 34314
90 % 1 2 32774
70 % 3 4 13834
50 % 3 4 12281
40 % 3 4 11131
30 % 3 4 9665

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1KQQ 3 A DEAD RINGER PROTEIN A/T Rich Interaction Domain 7227
2 1C20 1 A DEAD RINGER PROTEIN DNA-BINDING DOMAIN 7227