Sequence Similarity Clusters for the Entities in PDB 1KQQ

Entity #1 | Chains: B
5'-D(*CP*CP*TP*GP*TP*AP*TP*TP*GP*AP*TP*GP*TP*GP*G)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(*CP*CP*AP*CP*AP*TP*CP*AP*AP*TP*AP*CP*AP*GP*G)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DEAD RINGER PROTEIN protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66500
95 % 1 2 38771
90 % 1 2 36959
70 % 3 4 14768
50 % 3 4 13390
40 % 3 4 12010
30 % 3 4 9655

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1KQQ 3 A DEAD RINGER PROTEIN A/T Rich Interaction Domain 7227
2 1C20 1 A DEAD RINGER PROTEIN DNA-BINDING DOMAIN 7227