Sequence Similarity Clusters for the Entities in PDB 1KQQ

Entity #1 | Chains: B
5'-D(*CP*CP*TP*GP*TP*AP*TP*TP*GP*AP*TP*GP*TP*GP*G)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(*CP*CP*AP*CP*AP*TP*CP*AP*AP*TP*AP*CP*AP*GP*G)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DEAD RINGER PROTEIN protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63126
95 % 1 2 36721
90 % 1 2 35058
70 % 3 4 14392
50 % 3 4 12700
40 % 3 4 11402
30 % 3 4 9686

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4LJX 1 A, B AT-rich interactive domain-containing protein 3A ARID domain residues 216-351 9606
2 2KK0 1 A AT-rich interactive domain-containing protein 3A ARID domain 9606
3 1KQQ 3 A DEAD RINGER PROTEIN A/T Rich Interaction Domain 7227
4 1C20 1 A DEAD RINGER PROTEIN DNA-BINDING DOMAIN 7227