Sequence Similarity Clusters for the Entities in PDB 1KQM

Entity #1 | Chains: A
MYOSIN heavy chain protein, length: 835 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 14 3360
95 % 7 14 4132 Flexibility: High
Max RMSD: 28.6, Avg RMSD: 13.3
PDBFlex
90 % 7 17 3280
70 % 9 21 2645
50 % 16 48 444
40 % 62 99 281
30 % 84 124 234
Entity #2 | Chains: B
MYOSIN REGULATORY LIGHT CHAIN protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 18 2555
95 % 11 18 3202 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.2
PDBFlex
90 % 11 18 3248
70 % 14 24 2062
50 % 17 47 495
40 % 194 335 32
30 % 215 362 47
Entity #3 | Chains: C
MYOSIN ESSENTIAL LIGHT CHAIN protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 17 2771
95 % 14 24 2008 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 14 24 2061
70 % 14 24 2065
50 % 16 28 1771
40 % 195 335 32
30 % 216 362 47

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.