Sequence Similarity Clusters for the Entities in PDB 1KQM

Entity #1 | Chains: A
MYOSIN heavy chain protein, length: 835 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 14 3535
95 % 7 14 4316 Flexibility: High
Max RMSD: 28.4, Avg RMSD: 13.2
PDBFlex
90 % 7 17 3433
70 % 9 21 2771
50 % 18 50 452
40 % 64 101 291
30 % 86 126 241
Entity #2 | Chains: B
MYOSIN REGULATORY LIGHT CHAIN protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 18 2701
95 % 11 18 3350
90 % 11 18 3398
70 % 14 24 2155
50 % 17 47 514
40 % 197 341 42
30 % 218 368 53
Entity #3 | Chains: C
MYOSIN ESSENTIAL LIGHT CHAIN protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 17 2923
95 % 14 24 2112 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 14 24 2162
70 % 14 24 2158
50 % 16 28 1857
40 % 198 341 42
30 % 219 368 53

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures