Sequence Similarity Clusters for the Entities in PDB 1KQM

Entity #1 | Chains: A
MYOSIN heavy chain protein, length: 835 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 14 3656
95 % 7 14 4456 Flexibility: High
Max RMSD: 28.4, Avg RMSD: 13.2
PDBFlex
90 % 7 17 3552
70 % 9 21 2857
50 % 18 50 464
40 % 64 101 304
30 % 87 134 221
Entity #2 | Chains: B
MYOSIN REGULATORY LIGHT CHAIN protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 18 2793
95 % 11 18 3455
90 % 11 18 3515
70 % 14 24 2247
50 % 17 47 532
40 % 207 358 41
30 % 228 385 50
Entity #3 | Chains: C
MYOSIN ESSENTIAL LIGHT CHAIN protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 17 3022
95 % 14 24 2199 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 14 24 2253
70 % 14 24 2250
50 % 16 28 1927
40 % 208 358 41
30 % 229 385 50

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures