Sequence Similarity Clusters for the Entities in PDB 1KQM

Entity #1 | Chains: A
MYOSIN heavy chain protein, length: 835 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 14 4315
95 % 7 14 4635 Flexibility: High
Max RMSD: 28.6, Avg RMSD: 13.3
PDBFlex
90 % 7 17 3728
70 % 9 21 2947
50 % 55 91 361
40 % 68 111 276
30 % 88 135 234
Entity #2 | Chains: B
MYOSIN REGULATORY LIGHT CHAIN protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 18 3103
95 % 11 18 3417 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.2
PDBFlex
90 % 11 18 3478
70 % 14 24 2195
50 % 17 47 539
40 % 207 361 40
30 % 262 432 43
Entity #3 | Chains: C
MYOSIN ESSENTIAL LIGHT CHAIN protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 22 2049
95 % 14 22 2349 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 14 24 2182
70 % 14 24 2194
50 % 16 28 1898
40 % 208 361 40
30 % 263 432 43

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures