Sequence Similarity Clusters for the Entities in PDB 1KQG

Entity #1 | Chains: A
FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, MAJOR SUBUNIT protein, length: 1015 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51411
95 % 2 2 26080 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 2 2 25192
70 % 2 2 22873
50 % 2 2 19790
40 % 3 3 11648
30 % 3 3 10133
Entity #2 | Chains: B
FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, IRON-SULFUR SUBUNIT protein, length: 294 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 38088
95 % 2 2 29766 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 2 2 28713
70 % 2 2 25888
50 % 2 2 22161
40 % 2 2 19542
30 % 2 2 16615
Entity #3 | Chains: C
FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, CYTOCHROME B556(FDN) SUBUNIT protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41969
95 % 2 2 31996 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 2 2 30700
70 % 2 2 27454
50 % 2 2 23404
40 % 2 2 20595
30 % 2 2 17439

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures