Sequence Similarity Clusters for the Entities in PDB 1KQG

Entity #1 | Chains: A
FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, MAJOR SUBUNIT protein, length: 1015 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50064
95 % 2 2 25404 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 2 2 24551
70 % 2 2 22315
50 % 2 2 19329
40 % 3 3 11346
30 % 3 3 9868
Entity #2 | Chains: B
FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, IRON-SULFUR SUBUNIT protein, length: 294 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 37005
95 % 2 2 28979 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 2 2 27965
70 % 2 2 25237
50 % 2 2 21631
40 % 2 2 19087
30 % 2 2 16234
Entity #3 | Chains: C
FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, CYTOCHROME B556(FDN) SUBUNIT protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40776
95 % 2 2 31158 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 2 2 29914
70 % 2 2 26777
50 % 2 2 22856
40 % 2 2 20117
30 % 2 2 17039

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures