Sequence Similarity Clusters for the Entities in PDB 1KQF

Entity #1 | Chains: A
FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, MAJOR SUBUNIT protein, length: 1015 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49771
95 % 1 2 25243 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 2 24409
70 % 1 2 22208
50 % 1 2 19235
40 % 1 3 11288
30 % 1 3 9818
Entity #2 | Chains: B
FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, IRON-SULFUR SUBUNIT protein, length: 294 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 36797
95 % 1 2 28804 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 2 27809
70 % 1 2 25116
50 % 1 2 21525
40 % 1 2 19000
30 % 1 2 16164
Entity #3 | Chains: C
FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, CYTOCHROME B556(FDN) SUBUNIT protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40544
95 % 1 2 30969 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 2 29744
70 % 1 2 26650
50 % 1 2 22745
40 % 1 2 20027
30 % 1 2 16967

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.