Sequence Similarity Clusters for the Entities in PDB 1KQ2

Entity #1 | Chains: R
5'-R(*AP*UP*UP*UP*UP*UP*G)-3' rna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,H,I,K,M
Host factor for Q beta protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 1345
95 % 3 3 1791 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 3 3 1831
70 % 3 3 1857
50 % 3 3 1889
40 % 3 3 1889
30 % 5 7 941

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures