Sequence Similarity Clusters for the Entities in PDB 1KQ2

Entity #1 | Chains: R
5'-R(*AP*UP*UP*UP*UP*UP*G)-3' rna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,H,I,K,M
Host factor for Q beta protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 1323
95 % 3 3 1766 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 3 3 1801
70 % 3 3 1828
50 % 3 3 1854
40 % 3 3 1854
30 % 5 7 932

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.