Sequence Similarity Clusters for the Entities in PDB 1KQ2

Entity #1 | Chains: R
5'-R(*AP*UP*UP*UP*UP*UP*G)-3' rna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,H,I,K,M
Host factor for Q beta protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 1385
95 % 3 3 1859 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 3 3 1898
70 % 3 3 1917
50 % 3 3 1939
40 % 3 3 1936
30 % 5 7 958

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures