Sequence Similarity Clusters for the Entities in PDB 1KQ1

Entity #1 | Chains: A,B,H,I,K,M,N,R,S,T,W,Y
Host Factor for Q beta protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 1603
95 % 1 3 1885 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 1 3 1925
70 % 1 3 1947
50 % 1 3 1975
40 % 1 3 1956
30 % 1 7 964

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures