Sequence Similarity Clusters for the Entities in PDB 1KPV

Entity #1 | Chains: A
H-2 class I histocompatibility antigen, K-B alpha chain protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 49 412
95 % 6 65 367 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 6 70 368
70 % 109 717 6
50 % 109 722 6
40 % 113 773 10
30 % 121 897 15
Entity #2 | Chains: B
beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 135 96
95 % 13 228 60 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 13 228 65
70 % 133 914 4
50 % 137 936 3
40 % 137 936 7
30 % 137 936 12
Entity #3 | Chains: P
Nucleocapsid protein protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.