Sequence Similarity Clusters for the Entities in PDB 1KPU

Entity #1 | Chains: A
H-2 class I histocompatibility antigen, K-B alpha chain protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 49 387
95 % 2 65 352
90 % 2 70 356
70 % 36 681 6
50 % 36 686 6
40 % 37 736 10
30 % 37 853 15
Entity #2 | Chains: B
beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 133 95
95 % 2 215 64 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 2 215 68
70 % 48 872 4
50 % 49 894 4
40 % 49 894 8
30 % 49 894 14
Entity #3 | Chains: P
nucleocapsid protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.