Sequence Similarity Clusters for the Entities in PDB 1KPS

Entity #1 | Chains: A,C
Ubiquitin-like protein SUMO-1 conjugating enzyme protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 18 2275
95 % 22 31 1562 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 22 31 1598
70 % 22 31 1597
50 % 29 39 1063
40 % 116 181 170
30 % 119 191 170
Entity #2 | Chains: B,D
Ran-GTPase activating protein 1 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43908
95 % 1 1 33178 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 31703
70 % 9 14 4240
50 % 9 14 4073
40 % 9 14 3896
30 % 9 14 3626

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures