Sequence Similarity Clusters for the Entities in PDB 1KPS

Entity #1 | Chains: A,C
Ubiquitin-like protein SUMO-1 conjugating enzyme protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 18 2302
95 % 22 31 1583 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 22 31 1614
70 % 22 31 1618
50 % 29 39 1073
40 % 116 181 172
30 % 119 191 172
Entity #2 | Chains: B,D
Ran-GTPase activating protein 1 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44494
95 % 1 1 33606 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 32101
70 % 9 14 4300
50 % 9 14 4131
40 % 9 14 3941
30 % 9 14 3673

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures