Sequence Similarity Clusters for the Entities in PDB 1KPS

Entity #1 | Chains: A,C
Ubiquitin-like protein SUMO-1 conjugating enzyme protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 18 2202
95 % 22 31 1528 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 22 31 1559
70 % 22 31 1556
50 % 29 39 1038
40 % 115 177 167
30 % 117 185 176
Entity #2 | Chains: B,D
Ran-GTPase activating protein 1 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42973
95 % 1 1 32526 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 31111
70 % 9 14 4145
50 % 9 14 3991
40 % 9 14 3819
30 % 9 14 3559

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.