Sequence Similarity Clusters for the Entities in PDB 1KPS

Entity #1 | Chains: A,C
Ubiquitin-like protein SUMO-1 conjugating enzyme protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 18 2115
95 % 22 31 1475 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 22 31 1504
70 % 22 31 1507
50 % 29 39 1007
40 % 111 172 170
30 % 113 180 178
Entity #2 | Chains: B,D
Ran-GTPase activating protein 1 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41715
95 % 1 1 31587 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 30232
70 % 9 14 4008
50 % 9 14 3878
40 % 9 14 3714
30 % 9 14 3457

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.