Sequence Similarity Clusters for the Entities in PDB 1KPR

Entity #1 | Chains: A,C
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, ALPHA CHAIN protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20652
95 % 6 11 2266 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 6 11 2324
70 % 670 732 6
50 % 672 737 7
40 % 714 788 10
30 % 810 919 15
Entity #2 | Chains: B,D
BETA-2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 570 632 2
95 % 611 676 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 620 685 4
70 % 832 936 4
50 % 847 958 3
40 % 847 958 7
30 % 847 958 12
Entity #3 | Chains: P,Q
Peptide VMAPRTVLL protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures