Sequence Similarity Clusters for the Entities in PDB 1KPR

Entity #1 | Chains: A,C
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, ALPHA CHAIN protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20325
95 % 6 11 2227 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 6 11 2279
70 % 666 727 6
50 % 668 732 6
40 % 710 783 10
30 % 803 909 15
Entity #2 | Chains: B,D
BETA-2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 564 624 2
95 % 605 668 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 614 677 4
70 % 823 924 4
50 % 838 946 3
40 % 838 946 7
30 % 838 946 12
Entity #3 | Chains: P,Q
Peptide VMAPRTVLL protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures