Sequence Similarity Clusters for the Entities in PDB 1KOG

Entity #1 | Chains: I,J,K,L,M,N,O,P
Threonyl-tRNA synthetase mRNA rna, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C,D,E,F,G,H
Threonyl-tRNA synthetase protein, length: 401 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 10 1588
95 % 10 10 2127 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.0
PDBFlex
90 % 10 10 2179
70 % 10 10 2187
50 % 10 10 2180
40 % 18 18 1177
30 % 18 18 1164

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures