Sequence Similarity Clusters for the Entities in PDB 1KO6

Entity #1 | Chains: A,C
Nuclear Pore Complex Protein Nup98 protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42489
95 % 1 1 32225 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 30807
70 % 1 1 27497
50 % 1 1 23467
40 % 1 1 20644
30 % 1 1 17483
Entity #2 | Chains: B,D
Nuclear Pore Complex Protein Nup98 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48811
95 % 1 1 36472
90 % 1 1 34826
70 % 1 1 30956
50 % 1 1 26465
40 % 1 1 23352
30 % 1 1 19812

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures