Sequence Similarity Clusters for the Entities in PDB 1KO6

Entity #1 | Chains: A,C
Nuclear Pore Complex Protein Nup98 protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41318
95 % 1 1 31327 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 29983
70 % 1 1 26867
50 % 1 1 22974
40 % 1 1 20213
30 % 1 1 17119
Entity #2 | Chains: B,D
Nuclear Pore Complex Protein Nup98 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47535
95 % 1 1 35517
90 % 1 1 33952
70 % 1 1 30275
50 % 1 1 25928
40 % 1 1 22887
30 % 1 1 19411

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.