Sequence Similarity Clusters for the Entities in PDB 1KO6

Entity #1 | Chains: A,C
Nuclear Pore Complex Protein Nup98 protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45621
95 % 1 1 37994 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 36250
70 % 1 1 32186
50 % 1 1 24300
40 % 1 1 21499
30 % 1 1 17938
Entity #2 | Chains: B,D
Nuclear Pore Complex Protein Nup98 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39616
95 % 1 1 33439
90 % 1 1 32001
70 % 1 1 28595
50 % 1 1 24464
40 % 1 1 21500
30 % 1 1 17939

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures