Sequence Similarity Clusters for the Entities in PDB 1KNZ

Entity #1 | Chains: W,X,Y,Z
5'-R(*UP*GP*AP*CP*C)-3' rna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C,D,I,J,M,N
Nonstructural RNA-binding Protein 34 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 9191
95 % 1 1 9122 Flexibility: Medium
Max RMSD: 15.9, Avg RMSD: 9.1
PDBFlex
90 % 1 1 9026
70 % 1 1 8666
50 % 1 1 7908
40 % 1 1 7253
30 % 1 1 6313

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures