Sequence Similarity Clusters for the Entities in PDB 1KNZ

Entity #1 | Chains: W,X,Y,Z
5'-R(*UP*GP*AP*CP*C)-3' rna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C,D,I,J,M,N
Nonstructural RNA-binding Protein 34 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 9766
95 % 1 1 9886 Flexibility: Medium
Max RMSD: 15.9, Avg RMSD: 9.1
PDBFlex
90 % 1 1 9770
70 % 1 1 9318
50 % 1 1 8420
40 % 1 1 7723
30 % 1 1 6808

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures