Sequence Similarity Clusters for the Entities in PDB 1KNO

Entity #1 | Chains: A,C,E
IGG2A FAB FRAGMENT CNJ206 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27144
95 % 5 6 3683 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.5
PDBFlex
90 % 8 12 2280
70 % 1757 2264 1
50 % 3567 4587 1
40 % 3567 4587 1
30 % 4202 5394 1
Entity #2 | Chains: B,D,F
IGG2A FAB FRAGMENT CNJ206 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 26961
95 % 2 2 6255 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.8
PDBFlex
90 % 8 9 2663
70 % 1725 2222 2
50 % 3568 4587 1
40 % 3568 4587 1
30 % 4203 5394 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.