Sequence Similarity Clusters for the Entities in PDB 1KNO

Entity #1 | Chains: A,C,E
IGG2A FAB FRAGMENT CNJ206 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28415
95 % 5 6 3849 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.6
PDBFlex
90 % 8 12 2392
70 % 1877 2426 1
50 % 3809 4913 1
40 % 3809 4913 1
30 % 4497 5780 1
Entity #2 | Chains: B,D,F
IGG2A FAB FRAGMENT CNJ206 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28224
95 % 2 2 6521 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.7
PDBFlex
90 % 8 9 2796
70 % 1837 2376 2
50 % 3810 4913 1
40 % 3810 4913 1
30 % 4498 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures