Sequence Similarity Clusters for the Entities in PDB 1KNO

Entity #1 | Chains: A,C,E
IGG2A FAB FRAGMENT CNJ206 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27869
95 % 5 6 3765 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.6
PDBFlex
90 % 8 12 2339
70 % 1813 2346 1
50 % 3680 4752 1
40 % 3680 4752 1
30 % 4357 5606 1
Entity #2 | Chains: B,D,F
IGG2A FAB FRAGMENT CNJ206 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27681
95 % 2 2 6418 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.7
PDBFlex
90 % 8 9 2743
70 % 1776 2299 2
50 % 3681 4752 1
40 % 3681 4752 1
30 % 4358 5606 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.