Sequence Similarity Clusters for the Entities in PDB 1KNO

Entity #1 | Chains: A,C,E
IGG2A FAB FRAGMENT CNJ206 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28775
95 % 5 6 3896 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.6
PDBFlex
90 % 8 12 2434
70 % 1913 2474 1
50 % 3883 5011 1
40 % 3883 5011 1
30 % 4631 5941 1
Entity #2 | Chains: B,D,F
IGG2A FAB FRAGMENT CNJ206 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28585
95 % 2 2 6611 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.7
PDBFlex
90 % 8 9 2836
70 % 1873 2424 2
50 % 3884 5011 1
40 % 3884 5011 1
30 % 4632 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures