Sequence Similarity Clusters for the Entities in PDB 1KNO

Entity #1 | Chains: A,C,E
IGG2A FAB FRAGMENT CNJ206 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 26772
95 % 5 6 3622 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.6
PDBFlex
90 % 8 12 2226
70 % 1456 1828 2
50 % 3526 4501 1
40 % 3526 4501 1
30 % 4158 5303 1
Entity #2 | Chains: B,D,F
IGG2A FAB FRAGMENT CNJ206 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 26590
95 % 2 2 6136 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.8
PDBFlex
90 % 8 9 2622
70 % 1704 2178 1
50 % 3527 4501 1
40 % 3527 4501 1
30 % 4159 5303 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.