Sequence Similarity Clusters for the Entities in PDB 1KNA

Entity #1 | Chains: A
HETEROCHROMATIN PROTEIN 1 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 29208
95 % 2 3 24203 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 3 23429
70 % 2 3 21413
50 % 3 5 12050
40 % 3 5 10917
30 % 3 6 8550
Entity #2 | Chains: P
METHYLATED Histone H3 protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.