Sequence Similarity Clusters for the Entities in PDB 1KN2

Entity #1 | Chains: L
IG ANTIBODY D2.3 (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 14717
95 % 18 49 718 Flexibility: Low
Max RMSD: 6.4, Avg RMSD: 1.9
PDBFlex
90 % 18 50 711
70 % 368 1822 2
50 % 917 4489 1
40 % 917 4489 1
30 % 1004 5290 1
Entity #2 | Chains: H
IG ANTIBODY D2.3 (HEAVY CHAIN) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 6916
95 % 4 9 7453 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 4 10 6723
70 % 446 2172 1
50 % 918 4489 1
40 % 918 4489 1
30 % 1005 5290 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.