Sequence Similarity Clusters for the Entities in PDB 1KN2

Entity #1 | Chains: L
IG ANTIBODY D2.3 (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 15941
95 % 20 52 680 Flexibility: Low
Max RMSD: 6.4, Avg RMSD: 1.8
PDBFlex
90 % 20 53 686
70 % 513 2474 1
50 % 1055 5011 1
40 % 1055 5011 1
30 % 1189 5941 1
Entity #2 | Chains: H
IG ANTIBODY D2.3 (HEAVY CHAIN) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 7503
95 % 4 9 8075 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 4 10 7281
70 % 513 2424 2
50 % 1056 5011 1
40 % 1056 5011 1
30 % 1190 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures