Sequence Similarity Clusters for the Entities in PDB 1KN2

Entity #1 | Chains: L
IG ANTIBODY D2.3 (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 11 5642
95 % 19 50 718 Flexibility: Low
Max RMSD: 6.4, Avg RMSD: 1.9
PDBFlex
90 % 20 53 688
70 % 522 2538 1
50 % 1075 5152 1
40 % 1286 5806 1
30 % 1576 7240 1
Entity #2 | Chains: H
IG ANTIBODY D2.3 (HEAVY CHAIN) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 8069
95 % 4 9 8141 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 4 10 7720
70 % 523 2497 2
50 % 1076 5152 1
40 % 1287 5806 1
30 % 1577 7240 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures