Sequence Similarity Clusters for the Entities in PDB 1KN1

Entity #1 | Chains: A
Allophycocyanin protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55867
95 % 1 1 45918
90 % 1 1 43610
70 % 1 10 1621
50 % 2 13 1288
40 % 36 88 47
30 % 64 145 18
Entity #2 | Chains: B
Allophycocyanin protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 1651
95 % 1 6 1930 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 1 6 1978
70 % 2 12 1242
50 % 2 12 1285
40 % 37 88 47
30 % 65 145 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1KN1 2 B Allophycocyanin 2788
2 1ALL 2 B ALLOPHYCOCYANIN CHROMOPHORE PHYCOCYANOBILIN 118562
3 4RMP 2 B Allophycocyanin 1534976
4 1B33 2 B, D, F, I, K, M ALLOPHYCOCYANIN, BETA CHAIN BETA CHAINS 83541
5 5TJF 2 B Allophycocyanin beta subunit 2510777
6 5Y6P 5 H1, J1, L1, M1, O1, S1, U1, W1, Y1, a1, c1, e1, h1, j1, l1, n1, p1, r1, t1, v1, x1, z1 beta_APC 35689