Sequence Similarity Clusters for the Entities in PDB 1KN1

Entity #1 | Chains: A
Allophycocyanin protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56235
95 % 1 1 46245
90 % 1 1 43914
70 % 1 10 1637
50 % 2 13 1291
40 % 36 88 54
30 % 64 145 18
Entity #2 | Chains: B
Allophycocyanin protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 1668
95 % 1 6 1950 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 1 6 1999
70 % 2 12 1249
50 % 2 12 1288
40 % 37 88 54
30 % 65 145 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1KN1 1 A Allophycocyanin 2788
2 1ALL 1 A ALLOPHYCOCYANIN CHROMOPHORE PHYCOCYANOBILIN 118562
3 4RMP 1 A Allophycocyanin 1534976
4 1B33 1 A, C, E, H, J, L ALLOPHYCOCYANIN, ALPHA CHAIN ALPHA CHAINS 83541
5 2VJT 1 A ALLOPHYCOCYANIN ALPHA SUBUNIT 33072
6 5TJF 1 A Allophycocyanin alpha subunit 2510777
7 4F0U 1 A, C, E Allophycocyanin alpha chain 32046
8 3DBJ 1 A, C, E, G Allophycocyanin 32053
9 2V8A 1 A ALLOPHYCOCYANIN ALPHA CHAIN 146786
10 5Y6P 4 G1, I1, K1, N1, P1, R1, T1, X1, Z1, b1, d1, f1, i1, k1, o1, q1, s1, u1, w1, y1 alpha_APC 35689