Sequence Similarity Clusters for the Entities in PDB 1KN1

Entity #1 | Chains: A
Allophycocyanin protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54439
95 % 1 1 44801
90 % 1 1 42589
70 % 1 10 1565
50 % 2 13 1237
40 % 36 88 40
30 % 64 145 16
Entity #2 | Chains: B
Allophycocyanin protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 1588
95 % 1 6 1863 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 1 6 1905
70 % 2 12 1198
50 % 2 12 1244
40 % 37 88 40
30 % 65 145 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4PO5 1 A, C, E Allophycocyanin subunit alpha-B ApcD subunit 1148
2 1KN1 1 A Allophycocyanin 2788
3 1ALL 1 A ALLOPHYCOCYANIN CHROMOPHORE PHYCOCYANOBILIN 118562
4 4RMP 1 A Allophycocyanin 1534976
5 1B33 1 A, C, E, H, J, L ALLOPHYCOCYANIN, ALPHA CHAIN ALPHA CHAINS 83541
6 2VJT 1 A ALLOPHYCOCYANIN ALPHA SUBUNIT 33072
7 5TJF 1 A Allophycocyanin alpha subunit 2775
8 4F0U 1 A, C, E Allophycocyanin alpha chain 32046
9 3DBJ 1 A, C, E, G Allophycocyanin 32053
10 2V8A 1 A ALLOPHYCOCYANIN ALPHA CHAIN 146786
11 5Y6P 4 G1, I1, K1, N1, P1, R1, T1, X1, Z1, b1, d1, f1, i1, k1, o1, q1, s1, u1, w1, y1 alpha_APC 35689
12 5Y6P 7 V1, m1 ApcD 35689
13 3JBB 1 A, C, E, G, I, K allophycocyanin subunit alpha-B APCD subunit (SEE REMARK 999) 1209493