Sequence Similarity Clusters for the Entities in PDB 1KN1

Entity #1 | Chains: A
Allophycocyanin protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56235
95 % 1 1 46245
90 % 1 1 43914
70 % 1 10 1637
50 % 2 13 1291
40 % 36 88 54
30 % 64 145 18
Entity #2 | Chains: B
Allophycocyanin protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 1668
95 % 1 6 1950 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 1 6 1999
70 % 2 12 1249
50 % 2 12 1288
40 % 37 88 54
30 % 65 145 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1XG0 3 C, D B-phycoerythrin beta chain 79257
2 1XF6 3 C, D B-phycoerythrin beta chain 79257
3 5NB4 2 M, N, O, P, Q, R, S, T, U, V, W, X Phycoerythrin Beta subunit,Phycoerythrin Beta subunit There are three PEB chromophore molecules in the beta-subunit which are bound covalently to residues Cys80 (PEB186), Cys165 (PEB187) and Cys48/Cys59 (PEB188). 1534976
4 3L0F 2 B C-phycocyanin beta chain 146786
5 4LMS 2 B, D cryptophyte phycocyanin (beta chain) 3029
6 5NB3 2 M, N, O, P, Q, R, S, T, U, V, W, X Phycoerythrin Beta subunit,Phycoerythrin Beta subunit Three PEB chromophores are link covalently to Cys80 (PEB186), Cys165 (PEB187), and Cys48/Cys59 (PEB188) 1534976
7 1JBO 2 B C-Phycocyanin beta chain 32046
8 3KVS 2 B C-phycocyanin beta chain 130081
9 3O18 2 B C-phycocyanin beta subunit 32053
10 1QGW 3 C, D PROTEIN (CRYPTOPHYTAN PHYCOERYTHRIN (BETA CHAIN)) 79257
11 3O2C 2 B C-phycocyanin beta subunit 32053
12 4LM6 2 B, D cryptophyte phycocyanin beta chain 77927
13 1PHN 2 B PHYCOCYANIN CHAIN A IS THE ALPHA CHAIN, CHAIN B IS THE BETA CHAIN 2771
14 1CPC 2 B, L C-PHYCOCYANIN (BETA SUBUNIT) 1197
15 3V57 2 B, D Phycoerythrin beta subunit 35688
16 1KTP 2 B C-PHYCOCYANIN BETA SUBUNIT 32053
17 4PO5 1 A, C, E Allophycocyanin subunit alpha-B ApcD subunit 1148
18 4PO5 2 B, D, F Allophycocyanin beta chain ApcB subunit 1148
19 4LMX 2 B, D, F, H, J, L cryptophyte phycoerythrin (beta chain) 464988
20 4ZIZ 2 B C-phycocyanin beta chain 146786
21 3V58 2 B, D Phycoerythrin beta subunit 35688
22 3BRP 2 B C-phycocyanin beta chain 130081
23 1B8D 2 B, L PROTEIN (RHODOPHYTAN PHYCOERYTHRIN (BETA CHAIN)) PHYCOERYTHROBILIN PHYCOUROBILIN N-GAMMA METHYLATION OF ASN B72 AND ASN L72 42003
24 4Q70 2 B C-phycocyanin beta chain 146786
25 5FVB 2 M, N, O, P, Q, R, S, T, U, V, W, X C-PHYCOERYTHRIN BETA SUBUNIT PROTEIN-CHROMOPHORE LINK BETWEEN CYS-80 AND PEB-1185, PROTEIN-CHROMOPHORE LINK BETWEEN CYS-165 AND PEB-1886, PROTEIN- CHROMOPHORE LINK BETWEEN CYS-48/CYS-59 AND PEB-1187 FRAGMENT BETA-CHAIN RESIDUES 1-184 1534976
26 5TOU 2 B, D, F, H, J, L Phycocyanin beta-1 subunit 1357935
27 5MJP 2 B C-phycocyanin beta chain 146786
28 2VJH 2 B, D PHYCOERYTHRIN BETA SUBUNIT 33072
29 2BV8 2 B, D, F, L, N, P C-PHYCOCYANIN BETA SUBUNIT N-METHYL-ASPARAGINE 72 A (ALPHA CHAINS), PHYCOCYANOBILIN 84 A (ALPHA CHAINS), PHYCOCYANOBILIN 82 B AND 153 B (BETA CHAINS) 2510777
30 5AQD 2 M, N, O, P, Q, R, S, T, U, V, W, X PHYCOERYTHRIN BETA SUBUNIT PROTEIN-CHROMOPHORE LINK BETWEEN CYS-80 AND PEB-186 PROTEIN-CHROMOPHORE LINK BETWEEN CYS-165 AND PEB-187 PROTEIN-CHROMOPHORE LINK BETWEEN CYS-48 AND PEB-188 PROTEIN-CHROMOPHORE LINK BETWEEN CYS-59 AND PEB-188 BETA CHAIN, RESIDUES 1-184 1534976
31 5MJM 2 B C-phycocyanin beta chain 146786
32 5OOK 2 B Phycocyanin, beta subunit 155978
33 5B13 2 G, H, I, J, K, L Phycoerythrin beta subunit CYC and PUB are covalently attached to the polypeptide chain. 2822
34 1GH0 2 B, D, F, H, J, L, N, P, R, T, V, X C-PHYCOCYANIN BETA SUBUNIT 118562
35 1HA7 2 B, D, F, H, J, L, N, P, R, T, V, X C-PHYCOCYANIN BETA CHAIN BETA-CHAIN 118562
36 1KN1 1 A Allophycocyanin 2788
37 1KN1 2 B Allophycocyanin 2788
38 5O7M 2 B C-phycocyanin beta chain 146786
39 1EYX 2 B, L R-PHYCOERYTHRIN BETA CHAIN 2510777
40 1ALL 1 A ALLOPHYCOCYANIN CHROMOPHORE PHYCOCYANOBILIN 118562
41 1ALL 2 B ALLOPHYCOCYANIN CHROMOPHORE PHYCOCYANOBILIN 118562
42 4RMP 1 A Allophycocyanin 1534976
43 4RMP 2 B Allophycocyanin 1534976
44 1F99 2 B, L, N R-PHYCOCYANIN beta chain 65404
45 4F0T 2 B C-phycocyanin beta chain 1148
46 4N6S 2 B C-phycocyanin beta subunit 32053
47 1B33 1 A, C, E, H, J, L ALLOPHYCOCYANIN, ALPHA CHAIN ALPHA CHAINS 83541
48 1B33 2 B, D, F, I, K, M ALLOPHYCOCYANIN, BETA CHAIN BETA CHAINS 83541
49 2VML 2 B, D, F, H, J, L PHYCOCYANIN BETA CHAIN 33072
50 5MJQ 2 B C-phycocyanin beta chain 146786
51 4H0M 2 B, D, F, H, J, L, N, P, R, T, V, X C-phycocyanin beta chain 32046
52 4Z8K 2 B C-phycocyanin beta chain 146786
53 2VJT 1 A ALLOPHYCOCYANIN ALPHA SUBUNIT 33072
54 2VJT 2 B ALLOPHYCOCYANIN BETA SUBUNIT 33072
55 1I7Y 2 B C-PHYCOCYANIN BETA SUBUNIT 32053
56 1LIA 2 B, L R-PHYCOERYTHRIN 65404
57 5TJF 1 A Allophycocyanin alpha subunit 2510777
58 5TJF 2 B Allophycocyanin beta subunit 2510777
59 4GY3 2 B C-phycocyanin beta subunit 32053
60 2VJR 2 B PHYCOCYANIN BETA CHAIN 33072
61 4F0U 1 A, C, E Allophycocyanin alpha chain 32046
62 4F0U 2 B, D, F Allophycocyanin, beta subunit 32046
63 1ON7 2 B C-phycocyanin beta subunit 32053
64 4YJJ 2 B, D Beta Subunit of Cyanobacterial Phycocyanine protein 1198
65 5UVK 2 B C-phycocyanin beta chain 146786
66 2C7J 2 B PHYCOERYTHROCYANIN BETA CHAIN 83541
67 4L1E 2 B, D, F, H, J, L Phycocyanin beta chain 574115
68 2C7L 2 B PHYCOERYTHROCYANIN BETA CHAIN 83541
69 3DBJ 1 A, C, E, G Allophycocyanin 32053
70 3DBJ 2 B, D, F, H Allophycocyanin 32053
71 2UUM 2 B, D, F, H, J, L, N, P, R, T, V C-PHYCOCYANIN BETA CHAIN PHYCOCYANOBILIN ATTACHED ALFA-84 CYSTIENE RESIDUE AND BETA-82 AND 153 MONOMERS. 1157
72 2UUM 3 X C-PHYCOCYANIN BETA CHAIN PHYCOCYANOBILIN ATTACHED ALFA-84 CYSTIENE RESIDUE AND BETA-82 AND 153 MONOMERS. 1157
73 2UUL 2 B, F, J, L, N, P, R, T, V, X C-PHYCOCYANIN BETA CHAIN PHYCOCYANOBILIN ATTACHED ALFA-84 CYSTEINE RESIDUE AND BETA-82 AND 153 MONOMERS 1199
74 2UUL 4 D C-PHYCOCYANIN BETA CHAIN PHYCOCYANOBILIN ATTACHED ALFA-84 CYSTEINE RESIDUE AND BETA-82 AND 153 MONOMERS, RESIDUES 9 AND 10 ARE VAL SER IN THIS CHAIN WHEREAS IT IS ALA ALA IN OTHER CHAINS 1199
75 2UUL 5 H C-PHYCOCYANIN BETA CHAIN PHYCOCYANOBILIN ATTACHED ALFA-84 CYSTEINE RESIDUE AND BETA-82 AND 153 MONOMERS, RESIDUE 74 IS ASP IN THIS CHAIN WHERE AS IT IS TYR IN OTHER CHAINS 1199
76 2C7K 2 B PHYCOERYTHROCYANIN BETA CHAIN 83541
77 2UUN 2 B, F, H, J, L, N, P, R, T, V, X C-PHYCOCYANIN PHYCOCYANOBILIN ATTACHED AT ALFA CHAIN 84 AND BETA CHAIN 82 AND 153 47254
78 2UUN 3 D C-PHYCOCYANIN PHYCOCYANOBILIN ATTACHED AT ALFA CHAIN 84 AND BETA CHAIN 82 AND 153, RESIDUE 40 IS VAL WHEREAS IT IS ALA IN ALL OTHER CHAINS 47254
79 4GXE 2 B C-phycocyanin beta subunit 32053
80 2V8A 1 A ALLOPHYCOCYANIN ALPHA CHAIN 146786
81 2V8A 2 B ALLOPHYCOCYANIN BETA CHAIN 146786
82 5Y6P 11 A8, B3, B4, B5, B6, B7, B9, C8, D3, D4, D5, D6, D7, D9, E8, F2, F3, F4, F5, F6, F7, F9, G8, H2, H3, H4, H5, H6, H7, H9, I8, J2, J3, J4, J5, J6, J7, J9, K8, L2, L3, L4, L5, L6, L7, L9, M8, N2, N3, N4, N5, N6, N7, N9, O8, P2, P3, P4, P5, P6, P7, P9, Q8, R2, R3, R4, R5, R6, R7, R9, T2, T3, T4, T5, T6, T7, T9, V2, V3, V4, V5, V6, V7, V9, X2, X3, X4, X6, X7, Z2, Z3, Z4, Z6, Z7, a6, a7, aB, aD, aF, aH, aJ, aL, aN, aP, aR, aT, aV, an, ap, ar, at, av, ax, az, b6, b7, bB, bD, bF, bH, bJ, bL, bN, bP, bR, bT, bV, bn, bo, bp, bq, br, bs, bz, c6, c7, cB, cE, cF, cH, cJ, cL, cM, cN, cO, cP, cQ, cR, cY, cn, co, cp, cq, cr, cs, cz, d6, d7, dB, dD, dF, dH, dK, dL, dN, dP, dR, dT, dV, dX, dY, dd, df, dh, di, dj, dl, dn, dp, dr, dt, dv, e6, e7, eB, eD, eF, eH, eJ, eL, eN, eP, eR, eT, eV, eX, eb, ec, ee, eg, ei, el, en, ep, er, et, ev, f2, f3, f8, fa, fc, ff, fi, fj, fm, fo, fq, fs, fu, fw, fy, g8, ga, gd, ge, gg, gi, gk, gn, gp, gr, gt, gv, gx, h2, h3, h8, hB, hD, hG, hH, hJ, hL, hN, hP, hR, hT, hV, hX, iC, iD, iE, iF, iG, iH, j2, j3, jI, jJ, jK, jL, jM, jN, jO, jP, kQ, kR, kS, kT, kU, kV, kW, kX, l2, l3, l6, l7, lb, ld, lf, lh, lj, ll, ln, lp, lr, lt, lv, lx, n2, n3, n4, n5, n6, n7, n8, n9, o8, p2, p3, p4, p5, p6, p7, p8, p9, r2, r3, r4, r5, r6, r7, r9, t2, t3, t4, t5, t6, t7, t9, v2, v3, v4, v5, v6, v7, v9, w8, x2, x3, x4, x5, x6, x7, x9, y6, y7, y8, z2, z3, z4, z5, z6, z7, z9 R-phycoerythrin beta chain 35689
83 5Y6P 18 W8, Y8, ab, ad, af, ah, aj, al, bb, bd, bf, bh, bj, bl, c4, c5, cb, cd, cf, ch, cj, cl, e4, e5, f9, g4, g5, h4, h5, h9, j4, j5, j9, l4, l5, l9 beta_PC 35689
84 5Y6P 4 G1, I1, K1, N1, P1, R1, T1, X1, Z1, b1, d1, f1, i1, k1, o1, q1, s1, u1, w1, y1 alpha_APC 35689
85 5Y6P 5 H1, J1, L1, M1, O1, S1, U1, W1, Y1, a1, c1, e1, h1, j1, l1, n1, p1, r1, t1, v1, x1, z1 beta_APC 35689
86 5Y6P 7 V1, m1 ApcD 35689
87 3JBB 1 A, C, E, G, I, K allophycocyanin subunit alpha-B APCD subunit (SEE REMARK 999) 1209493
88 3JBB 2 B, D, F, H, J, L allophycocyanin beta chain APCB subunit (SEE REMARK 999) 1209493