Sequence Similarity Clusters for the Entities in PDB 1KN1

Entity #1 | Chains: A
Allophycocyanin protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52642
95 % 1 1 43373
90 % 1 1 41275
70 % 1 10 1484
50 % 2 13 1201
40 % 35 87 34
30 % 62 143 15
Entity #2 | Chains: B
Allophycocyanin protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 1509
95 % 1 6 1790
90 % 1 6 1832
70 % 2 12 1154
50 % 2 12 1208
40 % 36 87 34
30 % 63 143 15

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1XG0 3 C, D B-phycoerythrin beta chain 79257
2 1XF6 3 C, D B-phycoerythrin beta chain 79257
3 5NB4 1 A, B, C, D, E, F, G, H, I, J, K, L Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit There are two PEB chromophore molecules in the alpha-subunit covalently bound to residues Cys82 (PEB166) and Cys139 (PEB167). 1534976
4 5NB4 2 M, N, O, P, Q, R, S, T, U, V, W, X Phycoerythrin Beta subunit,Phycoerythrin Beta subunit There are three PEB chromophore molecules in the beta-subunit which are bound covalently to residues Cys80 (PEB186), Cys165 (PEB187) and Cys48/Cys59 (PEB188). 1534976
5 3L0F 1 A C-phycocyanin alpha chain 146786
6 3L0F 2 B C-phycocyanin beta chain 146786
7 4LMS 2 B, D cryptophyte phycocyanin (beta chain) 3029
8 5NB3 1 A, B, C, D, E, F, G, H, I, J, K, L Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit,Phycoerythrin Alpha subunit Two PEB chromophores are covalently linked by residues Cys82 (PEB166) and Cys139 (PEB167) 1534976
9 5NB3 2 M, N, O, P, Q, R, S, T, U, V, W, X Phycoerythrin Beta subunit,Phycoerythrin Beta subunit Three PEB chromophores are link covalently to Cys80 (PEB186), Cys165 (PEB187), and Cys48/Cys59 (PEB188) 1534976
10 1JBO 1 A C-Phycocyanin alpha chain 32046
11 1JBO 2 B C-Phycocyanin beta chain 32046
12 3KVS 1 A C-phycocyanin alpha chain 130081
13 3KVS 2 B C-phycocyanin beta chain 130081
14 3O18 1 A C-phycocyanin alpha subunit 32053
15 3O18 2 B C-phycocyanin beta subunit 32053
16 1QGW 3 C, D PROTEIN (CRYPTOPHYTAN PHYCOERYTHRIN (BETA CHAIN)) 79257
17 3O2C 1 A C-phycocyanin alpha subunit 32053
18 3O2C 2 B C-phycocyanin beta subunit 32053
19 4LM6 2 B, D cryptophyte phycocyanin beta chain 77927
20 1PHN 1 A PHYCOCYANIN CHAIN A IS THE ALPHA CHAIN, CHAIN B IS THE BETA CHAIN 2771
21 1PHN 2 B PHYCOCYANIN CHAIN A IS THE ALPHA CHAIN, CHAIN B IS THE BETA CHAIN 2771
22 1CPC 1 A, K C-PHYCOCYANIN (ALPHA SUBUNIT) 1197
23 1CPC 2 B, L C-PHYCOCYANIN (BETA SUBUNIT) 1197
24 3V57 1 A, C Phycoerythrin alpha subunit 35688
25 3V57 2 B, D Phycoerythrin beta subunit 35688
26 1KTP 1 A C-PHYCOCYANIN ALPHA SUBUNIT 32053
27 1KTP 2 B C-PHYCOCYANIN BETA SUBUNIT 32053
28 4PO5 1 A, C, E Allophycocyanin subunit alpha-B ApcD subunit 1148
29 4PO5 2 B, D, F Allophycocyanin beta chain ApcB subunit 1148
30 4LMX 2 B, D, F, H, J, L cryptophyte phycoerythrin (beta chain) 464988
31 4ZIZ 1 A C-phycocyanin alpha chain 146786
32 4ZIZ 2 B C-phycocyanin beta chain 146786
33 3V58 1 A, C Phycoerythrin alpha subunit 35688
34 3V58 2 B, D Phycoerythrin beta subunit 35688
35 3BRP 1 A C-phycocyanin alpha chain 130081
36 3BRP 2 B C-phycocyanin beta chain 130081
37 1B8D 1 A, K PROTEIN (RHODOPHYTAN PHYCOERYTHRIN (ALPHA CHAIN)) PHYCOERYTHROBILIN PHYCOUROBILIN N-GAMMA METHYLATION OF ASN B72 AND ASN L72 42003
38 1B8D 2 B, L PROTEIN (RHODOPHYTAN PHYCOERYTHRIN (BETA CHAIN)) PHYCOERYTHROBILIN PHYCOUROBILIN N-GAMMA METHYLATION OF ASN B72 AND ASN L72 42003
39 4Q70 1 A C-phycocyanin alpha chain 146786
40 4Q70 2 B C-phycocyanin beta chain 146786
41 5FVB 1 A, B, C, D, E, F, G, H, I, J, K, L C-PHYCOERYTHRIN ALPHA SUBUNIT PROTEIN-CHROMOPHORE LINK BETWEEN CYS-82 AND PEB-1165, PROTEIN-CHROMOPHORE LINK BETWEEN CYS-139 AND PEB-1166 FRAGMENT ALPHA-CHAIN RESIDUES 1-164 1534976
42 5FVB 2 M, N, O, P, Q, R, S, T, U, V, W, X C-PHYCOERYTHRIN BETA SUBUNIT PROTEIN-CHROMOPHORE LINK BETWEEN CYS-80 AND PEB-1185, PROTEIN-CHROMOPHORE LINK BETWEEN CYS-165 AND PEB-1886, PROTEIN- CHROMOPHORE LINK BETWEEN CYS-48/CYS-59 AND PEB-1187 FRAGMENT BETA-CHAIN RESIDUES 1-184 1534976
43 5TOU 1 A, C, E, G, I, K Phycocyanin alpha-1 subunit 1357935
44 5TOU 2 B, D, F, H, J, L Phycocyanin beta-1 subunit 1357935
45 5MJP 1 A C-phycocyanin alpha chain 146786
46 5MJP 2 B C-phycocyanin beta chain 146786
47 2VJH 1 A, C PHYCOERYTHRIN ALPHA CHAIN 33072
48 2VJH 2 B, D PHYCOERYTHRIN BETA SUBUNIT 33072
49 2BV8 1 A, C, E, K, M, O C-PHYCOCYANIN ALPHA SUBUNIT N-METHYL-ASPARAGINE 72 A (ALPHA CHAINS), PHYCOCYANOBILIN 84 A (ALPHA CHAINS), PHYCOCYANOBILIN 82 B AND 153 B (BETA CHAINS) 2775
50 2BV8 2 B, D, F, L, N, P C-PHYCOCYANIN BETA SUBUNIT N-METHYL-ASPARAGINE 72 A (ALPHA CHAINS), PHYCOCYANOBILIN 84 A (ALPHA CHAINS), PHYCOCYANOBILIN 82 B AND 153 B (BETA CHAINS) 2775
51 5AQD 1 A, B, C, D, E, F, G, H, I, J, K, L PHYCOERYTHRIN ALPHA SUBUNIT PROTEIN-CHROMOPHORE LINK BETWEEN CYS-82 AND PEB-166 PROTEIN-CHROMOPHORE LINK BETWEEN CYS-139 AND PEB-167 ALPHA CHAIN, RESIDUES 1-164 1534976
52 5AQD 2 M, N, O, P, Q, R, S, T, U, V, W, X PHYCOERYTHRIN BETA SUBUNIT PROTEIN-CHROMOPHORE LINK BETWEEN CYS-80 AND PEB-186 PROTEIN-CHROMOPHORE LINK BETWEEN CYS-165 AND PEB-187 PROTEIN-CHROMOPHORE LINK BETWEEN CYS-48 AND PEB-188 PROTEIN-CHROMOPHORE LINK BETWEEN CYS-59 AND PEB-188 BETA CHAIN, RESIDUES 1-184 1534976
53 5MJM 1 A C-phycocyanin alpha chain 146786
54 5MJM 2 B C-phycocyanin beta chain 146786
55 5B13 1 A, B, C, D, E, F Phycoerythrin alpha subunit CYCs are covalently attached to the polypeptide chain. 2822
56 5B13 2 G, H, I, J, K, L Phycoerythrin beta subunit CYC and PUB are covalently attached to the polypeptide chain. 2822
57 4XXI 1 A, B Phycobiliprotein ApcE UNP residues 20-240, with deletion of residues 77-153 103690 4 | Details
58 1GH0 1 A, C, E, G, I, K, M, O, Q, S, U, W C-PHYCOCYANIN ALPHA SUBUNIT 118562
59 1GH0 2 B, D, F, H, J, L, N, P, R, T, V, X C-PHYCOCYANIN BETA SUBUNIT 118562
60 1HA7 1 A, C, E, G, I, K, M, O, Q, S, U, W C-PHYCOCYANIN ALPHA CHAIN ALPHA-CHAIN 118562
61 1HA7 2 B, D, F, H, J, L, N, P, R, T, V, X C-PHYCOCYANIN BETA CHAIN BETA-CHAIN 118562
62 1KN1 1 A Allophycocyanin 2788
63 1KN1 2 B Allophycocyanin 2788
64 5O7M 1 A C-phycocyanin alpha chain 146786
65 5O7M 2 B C-phycocyanin beta chain 146786
66 1EYX 1 A, K R-PHYCOERYTHRIN ALPHA CHAIN 2775
67 1EYX 2 B, L R-PHYCOERYTHRIN BETA CHAIN 2775
68 1ALL 1 A ALLOPHYCOCYANIN CHROMOPHORE PHYCOCYANOBILIN 118562
69 1ALL 2 B ALLOPHYCOCYANIN CHROMOPHORE PHYCOCYANOBILIN 118562
70 4RMP 1 A Allophycocyanin 1534976
71 4RMP 2 B Allophycocyanin 1534976
72 1F99 1 A, K, M R-PHYCOCYANIN alpha chain 65404
73 1F99 2 B, L, N R-PHYCOCYANIN beta chain 65404
74 4F0T 1 A C-phycocyanin alpha chain 1148
75 4F0T 2 B C-phycocyanin beta chain 1148
76 4N6S 1 A C-phycocyanin alpha subunit 32053
77 4N6S 2 B C-phycocyanin beta subunit 32053
78 1B33 1 A, C, E, H, J, L ALLOPHYCOCYANIN, ALPHA CHAIN ALPHA CHAINS 83541
79 1B33 2 B, D, F, I, K, M ALLOPHYCOCYANIN, BETA CHAIN BETA CHAINS 83541
80 2VML 1 A, C, E, G, I, K PHYCOCYANIN ALPHA CHAIN 33072
81 2VML 2 B, D, F, H, J, L PHYCOCYANIN BETA CHAIN 33072
82 5MJQ 1 A C-phycocyanin alpha chain 146786
83 5MJQ 2 B C-phycocyanin beta chain 146786
84 4H0M 1 A, C, E, G, I, K, M, O, Q, S, U, W C-phycocyanin alpha chain 32046
85 4H0M 2 B, D, F, H, J, L, N, P, R, T, V, X C-phycocyanin beta chain 32046
86 4Z8K 1 A C-phycocyanin alpha chain 146786
87 4Z8K 2 B C-phycocyanin beta chain 146786
88 2J96 1 A, B PHYCOERYTHROCYANIN ALPHA CHAIN PHYCOVIOLOBILIN CHROMOPHORE ATTACHED TO CYS84 AND REFINED AS A WHOLE 83541
89 2VJT 1 A ALLOPHYCOCYANIN ALPHA SUBUNIT 33072
90 2VJT 2 B ALLOPHYCOCYANIN BETA SUBUNIT 33072
91 1I7Y 1 A C-PHYCOCYANIN ALPHA SUBUNIT 32053
92 1I7Y 2 B C-PHYCOCYANIN BETA SUBUNIT 32053
93 1LIA 1 A, K R-PHYCOERYTHRIN 65404
94 1LIA 2 B, L R-PHYCOERYTHRIN 65404
95 5TJF 1 A Allophycocyanin alpha subunit 2775
96 5TJF 2 B Allophycocyanin beta subunit 2775
97 4GY3 1 A C-phycocyanin alpha subunit 32053
98 4GY3 2 B C-phycocyanin beta subunit 32053
99 2VJR 1 A PHYCOCYANIN ALPHA CHAIN 33072
100 2VJR 2 B PHYCOCYANIN BETA CHAIN 33072
101 4F0U 1 A, C, E Allophycocyanin alpha chain 32046
102 4F0U 2 B, D, F Allophycocyanin, beta subunit 32046
103 1ON7 1 A C-phycocyanin alpha subunit 32053
104 1ON7 2 B C-phycocyanin beta subunit 32053
105 4YJJ 1 A, C Alpha Subunit of Cyanobacterial Phycocyanine protein 1198
106 4YJJ 2 B, D Beta Subunit of Cyanobacterial Phycocyanine protein 1198
107 4XXK 1 A, B Phycobiliprotein ApcE UNP residues 20-154, with deletion of residues 77-153 103690 4 | Details
108 5UVK 1 A C-phycocyanin alpha chain 146786
109 5UVK 2 B C-phycocyanin beta chain 146786
110 2C7J 1 A PHYCOERYTHROCYANIN ALPHA CHAIN 83541
111 2C7J 2 B PHYCOERYTHROCYANIN BETA CHAIN 83541
112 4L1E 1 A, C, E, G, I, K Phycocyanin alpha chain 574115
113 4L1E 2 B, D, F, H, J, L Phycocyanin beta chain 574115
114 2C7L 1 A PHYCOERYTHROCYANIN ALPHA CHAIN 83541
115 2C7L 2 B PHYCOERYTHROCYANIN BETA CHAIN 83541
116 3DBJ 1 A, C, E, G Allophycocyanin 32053
117 3DBJ 2 B, D, F, H Allophycocyanin 32053
118 2UUM 1 A, C, E, G, I, K, M, O, Q, S, U, W C-PHYCOCYANIN ALPHA CHAIN PHYCOCYANOBILIN ATTACHED ALFA-84 CYSTIENE RESIDUE AND BETA-82 AND 153 MONOMERS 1157
119 2UUM 2 B, D, F, H, J, L, N, P, R, T, V C-PHYCOCYANIN BETA CHAIN PHYCOCYANOBILIN ATTACHED ALFA-84 CYSTIENE RESIDUE AND BETA-82 AND 153 MONOMERS. 1157
120 2UUM 3 X C-PHYCOCYANIN BETA CHAIN PHYCOCYANOBILIN ATTACHED ALFA-84 CYSTIENE RESIDUE AND BETA-82 AND 153 MONOMERS. 1157
121 2UUL 1 A, E, G, I, K, M, O, Q, S, U, W C-PHYCOCYANIN ALPHA CHAIN PHYCOCYANOBILIN ATTACHED ALFA-84 CYSTEINE RESIDUE AND BETA-82 AND 153 MONOMERS 1199
122 2UUL 2 B, F, J, L, N, P, R, T, V, X C-PHYCOCYANIN BETA CHAIN PHYCOCYANOBILIN ATTACHED ALFA-84 CYSTEINE RESIDUE AND BETA-82 AND 153 MONOMERS 1199
123 2UUL 3 C C-PHYCOCYANIN ALPHA CHAIN PHYCOCYANOBILIN ATTACHED ALFA-84 CYSTEINE RESIDUE AND BETA-82 AND 153 MONOMERS, RESIDUE 143 IS SER IN CHAIN C WHERE AS IT IS ALA IN OTHER CHAINS 1199
124 2UUL 4 D C-PHYCOCYANIN BETA CHAIN PHYCOCYANOBILIN ATTACHED ALFA-84 CYSTEINE RESIDUE AND BETA-82 AND 153 MONOMERS, RESIDUES 9 AND 10 ARE VAL SER IN THIS CHAIN WHEREAS IT IS ALA ALA IN OTHER CHAINS 1199
125 2UUL 5 H C-PHYCOCYANIN BETA CHAIN PHYCOCYANOBILIN ATTACHED ALFA-84 CYSTEINE RESIDUE AND BETA-82 AND 153 MONOMERS, RESIDUE 74 IS ASP IN THIS CHAIN WHERE AS IT IS TYR IN OTHER CHAINS 1199
126 2C7K 1 A PHYCOERYTHROCYANIN ALPHA CHAIN 83541
127 2C7K 2 B PHYCOERYTHROCYANIN BETA CHAIN 83541
128 2UUN 1 A, C, E, G, I, K, M, O, Q, S, U, W C-PHYCOCYANIN PHYCOCYANOBILIN ATTACHED AT ALFA CHAIN 84 AND BETA CHAIN 82 AND 153 47254
129 2UUN 2 B, F, H, J, L, N, P, R, T, V, X C-PHYCOCYANIN PHYCOCYANOBILIN ATTACHED AT ALFA CHAIN 84 AND BETA CHAIN 82 AND 153 47254
130 2UUN 3 D C-PHYCOCYANIN PHYCOCYANOBILIN ATTACHED AT ALFA CHAIN 84 AND BETA CHAIN 82 AND 153, RESIDUE 40 IS VAL WHEREAS IT IS ALA IN ALL OTHER CHAINS 47254
131 4GXE 1 A C-phycocyanin alpha subunit 32053
132 4GXE 2 B C-phycocyanin beta subunit 32053
133 2V8A 1 A ALLOPHYCOCYANIN ALPHA CHAIN 146786
134 2V8A 2 B ALLOPHYCOCYANIN BETA CHAIN 146786
135 5Y6P 10 A3, A4, A5, A6, A7, A9, B8, C3, C4, C5, C6, C7, C9, D8, E2, E3, E4, E5, E6, E7, E9, F8, G2, G3, G4, G5, G6, G7, G9, H8, I2, I3, I4, I5, I6, I7, I9, J8, K2, K3, K4, K5, K6, K7, K9, L8, M2, M3, M4, M5, M6, M7, M9, N8, O2, O3, O4, O5, O6, O7, O9, P8, Q2, Q3, Q4, Q5, Q6, Q7, Q9, S2, S3, S4, S5, S6, S7, S9, U2, U3, U4, U5, U6, U7, U9, W2, W3, W4, W6, W7, Y2, Y3, Y4, Y6, Y7, aA, aC, aE, aG, aI, aK, aM, aO, aQ, aS, aU, am, ao, aq, as, au, aw, ay, bA, bC, bE, bG, bI, bK, bM, bO, bQ, bS, bU, bm, bt, bu, bv, bw, bx, by, cA, cC, cD, cG, cI, cK, cS, cT, cU, cV, cW, cX, cZ, cm, ct, cu, cv, cw, cx, cy, dA, dC, dE, dG, dI, dJ, dM, dO, dQ, dS, dU, dW, dZ, da, db, dc, de, dg, dk, dm, do, dq, ds, du, e2, e3, eA, eC, eE, eG, eI, eK, eM, eO, eQ, eS, eU, eW, ea, ed, ef, eh, ej, ek, em, eo, eq, es, eu, f6, f7, fb, fe, fg, fh, fk, fl, fn, fp, fr, ft, fv, fx, g2, g3, g6, g7, gb, gc, gf, gh, gj, gl, gm, go, gq, gs, gu, gw, h6, h7, hA, hC, hE, hF, hI, hK, hM, hO, hQ, hS, hU, hW, i2, i3, i6, i7, i8, iA, iB, j6, j7, j8, k2, k3, k6, k7, k8, l8, la, lc, le, lg, li, lk, lm, lo, lq, ls, lu, lw, m2, m3, m4, m5, m6, m7, m8, m9, o2, o3, o4, o5, o6, o7, o9, q2, q3, q4, q5, q6, q7, q8, q9, r8, s2, s3, s4, s5, s6, s7, s8, s9, t8, u2, u3, u4, u5, u6, u7, u8, u9, v8, w2, w3, w4, w5, w6, w7, w9, x8, y2, y3, y4, y5, y9, z8 R-phycoerythrin alpha chain 35689
136 5Y6P 11 A8, B3, B4, B5, B6, B7, B9, C8, D3, D4, D5, D6, D7, D9, E8, F2, F3, F4, F5, F6, F7, F9, G8, H2, H3, H4, H5, H6, H7, H9, I8, J2, J3, J4, J5, J6, J7, J9, K8, L2, L3, L4, L5, L6, L7, L9, M8, N2, N3, N4, N5, N6, N7, N9, O8, P2, P3, P4, P5, P6, P7, P9, Q8, R2, R3, R4, R5, R6, R7, R9, T2, T3, T4, T5, T6, T7, T9, V2, V3, V4, V5, V6, V7, V9, X2, X3, X4, X6, X7, Z2, Z3, Z4, Z6, Z7, a6, a7, aB, aD, aF, aH, aJ, aL, aN, aP, aR, aT, aV, an, ap, ar, at, av, ax, az, b6, b7, bB, bD, bF, bH, bJ, bL, bN, bP, bR, bT, bV, bn, bo, bp, bq, br, bs, bz, c6, c7, cB, cE, cF, cH, cJ, cL, cM, cN, cO, cP, cQ, cR, cY, cn, co, cp, cq, cr, cs, cz, d6, d7, dB, dD, dF, dH, dK, dL, dN, dP, dR, dT, dV, dX, dY, dd, df, dh, di, dj, dl, dn, dp, dr, dt, dv, e6, e7, eB, eD, eF, eH, eJ, eL, eN, eP, eR, eT, eV, eX, eb, ec, ee, eg, ei, el, en, ep, er, et, ev, f2, f3, f8, fa, fc, ff, fi, fj, fm, fo, fq, fs, fu, fw, fy, g8, ga, gd, ge, gg, gi, gk, gn, gp, gr, gt, gv, gx, h2, h3, h8, hB, hD, hG, hH, hJ, hL, hN, hP, hR, hT, hV, hX, iC, iD, iE, iF, iG, iH, j2, j3, jI, jJ, jK, jL, jM, jN, jO, jP, kQ, kR, kS, kT, kU, kV, kW, kX, l2, l3, l6, l7, lb, ld, lf, lh, lj, ll, ln, lp, lr, lt, lv, lx, n2, n3, n4, n5, n6, n7, n8, n9, o8, p2, p3, p4, p5, p6, p7, p8, p9, r2, r3, r4, r5, r6, r7, r9, t2, t3, t4, t5, t6, t7, t9, v2, v3, v4, v5, v6, v7, v9, w8, x2, x3, x4, x5, x6, x7, x9, y6, y7, y8, z2, z3, z4, z5, z6, z7, z9 R-phycoerythrin beta chain 35689
137 5Y6P 17 V8, X8, Z8, a4, a5, aa, ac, ae, ag, ai, ak, b4, b5, ba, bc, be, bg, bi, bk, ca, cc, ce, cg, ci, ck, d4, d5, f4, f5, g9, i4, i5, i9, k4, k5, k9 alpha_PC 35689
138 5Y6P 18 W8, Y8, ab, ad, af, ah, aj, al, bb, bd, bf, bh, bj, bl, c4, c5, cb, cd, cf, ch, cj, cl, e4, e5, f9, g4, g5, h4, h5, h9, j4, j5, j9, l4, l5, l9 beta_PC 35689
139 5Y6P 4 G1, I1, K1, N1, P1, R1, T1, X1, Z1, b1, d1, f1, i1, k1, o1, q1, s1, u1, w1, y1 alpha_APC 35689
140 5Y6P 5 H1, J1, L1, M1, O1, S1, U1, W1, Y1, a1, c1, e1, h1, j1, l1, n1, p1, r1, t1, v1, x1, z1 beta_APC 35689
141 5Y6P 7 V1, m1 ApcD 35689
142 3JBB 1 A, C, E, G, I, K allophycocyanin subunit alpha-B APCD subunit (SEE REMARK 999) 1209493
143 3JBB 2 B, D, F, H, J, L allophycocyanin beta chain APCB subunit (SEE REMARK 999) 1209493