Sequence Similarity Clusters for the Entities in PDB 1KN1

Entity #1 | Chains: A
Allophycocyanin protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 80101
95 % 1 1 47139
90 % 1 1 44653
70 % 1 10 1688
50 % 2 13 1319
40 % 3 25 616
30 % 36 88 45
Entity #2 | Chains: B
Allophycocyanin protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 64739
95 % 1 1 47140 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 2 8 3177
70 % 2 12 1276
50 % 2 12 1321
40 % 4 25 616
30 % 37 88 45

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures