Sequence Similarity Clusters for the Entities in PDB 1KMN

Entity #1 | Chains: A,B,C,D
HISTIDYL-TRNA SYNTHETASE protein, length: 424 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 3134
95 % 4 4 3893 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.7
PDBFlex
90 % 4 4 3932
70 % 4 4 3892
50 % 5 5 3322
40 % 10 11 1780
30 % 30 33 852

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5E3I 1 A, B Histidine--tRNA ligase 470 6.1.1.21 | Details
2 1H4V 1 B HISTIDYL-TRNA SYNTHETASE LIGAND FREE FORM OF THE ENZYME 274 6.1.1.21 | Details
3 4RDX 1 A Histidine--tRNA ligase histidinyl-tRNA synthetase 274 6.1.1.21 | Details
4 1QE0 1 A, B Histidine--tRNA ligase 1280 6.1.1.21 | Details
5 4E51 1 A, B Histidine--tRNA ligase 57975 6.1.1.21 | Details
6 1KMM 1 A, B, C, D HISTIDYL-TRNA SYNTHETASE 562 6.1.1.21 | Details
7 1ADJ 1 A, B, C, D HISTIDYL-TRNA SYNTHETASE HISTIDINE PRESENT IN THE ACTIVE SITE 274 6.1.1.21 | Details
8 2EL9 1 A, B, C, D Histidyl-tRNA synthetase 562 6.1.1.21 | Details
9 1HTT 1 A, B, C, D HISTIDYL-TRNA SYNTHETASE 562 6.1.1.21 | Details
10 1KMN 1 A, B, C, D HISTIDYL-TRNA SYNTHETASE 562 6.1.1.21 | Details
11 1ADY 1 A, B, C, D HISTIDYL-TRNA SYNTHETASE HISTIDYL-ADENYLATE PRODUCED ENZYMATICALLY IN THE CRYSTAL IS PRESENT IN THE ACTIVE SITE 274 6.1.1.21 | Details