Sequence Similarity Clusters for the Entities in PDB 1KMN

Entity #1 | Chains: A,B,C,D
HISTIDYL-TRNA SYNTHETASE protein, length: 424 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 3867
95 % 4 4 4230 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.6
PDBFlex
90 % 4 4 4278
70 % 4 4 4195
50 % 5 5 3567
40 % 10 11 1968
30 % 30 33 908

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5E3I 1 A, B Histidine--tRNA ligase 470 6.1.1.21 | Details
2 1H4V 1 B HISTIDYL-TRNA SYNTHETASE LIGAND FREE FORM OF THE ENZYME 274 6.1.1.21 | Details
3 4RDX 1 A Histidine--tRNA ligase histidinyl-tRNA synthetase 274 6.1.1.21 | Details
4 1QE0 1 A, B Histidine--tRNA ligase 1280 6.1.1.21 | Details
5 4E51 1 A, B Histidine--tRNA ligase 57975 6.1.1.21 | Details
6 1KMM 1 A, B, C, D HISTIDYL-TRNA SYNTHETASE 562 6.1.1.21 | Details
7 1ADJ 1 A, B, C, D HISTIDYL-TRNA SYNTHETASE HISTIDINE PRESENT IN THE ACTIVE SITE 274 6.1.1.21 | Details
8 2EL9 1 A, B, C, D Histidyl-tRNA synthetase 562 6.1.1.21 | Details
9 1HTT 1 A, B, C, D HISTIDYL-TRNA SYNTHETASE 562 6.1.1.21 | Details
10 1KMN 1 A, B, C, D HISTIDYL-TRNA SYNTHETASE 562 6.1.1.21 | Details
11 1ADY 1 A, B, C, D HISTIDYL-TRNA SYNTHETASE HISTIDYL-ADENYLATE PRODUCED ENZYMATICALLY IN THE CRYSTAL IS PRESENT IN THE ACTIVE SITE 274 6.1.1.21 | Details