Sequence Similarity Clusters for the Entities in PDB 1KMI

Entity #1 | Chains: Y
Chemotaxis protein cheY protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 16 1516
95 % 70 74 289 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 0.8
PDBFlex
90 % 71 75 298
70 % 71 75 336
50 % 80 84 353
40 % 89 93 334
30 % 213 243 115
Entity #2 | Chains: Z
Chemotaxis protein cheZ protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58610
95 % 1 1 41029
90 % 1 1 39094
70 % 1 1 34537
50 % 1 1 29478
40 % 1 1 26013
30 % 1 1 22042

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.