Sequence Similarity Clusters for the Entities in PDB 1KMH

Entity #1 | Chains: A
ATPase alpha subunit protein, length: 507 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 32597
95 % 1 2 26525 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 2 25626
70 % 1 2 23262
50 % 45 72 172
40 % 45 72 186
30 % 45 72 199
Entity #2 | Chains: B
ATPase beta subunit protein, length: 498 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 32712
95 % 1 2 26595 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 25692
70 % 46 73 142
50 % 47 74 167
40 % 47 74 182
30 % 47 74 195

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures