Sequence Similarity Clusters for the Entities in PDB 1KMH

Entity #1 | Chains: A
ATPase alpha subunit protein, length: 507 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 32057
95 % 1 2 26132 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 2 25250
70 % 1 2 22930
50 % 45 71 172
40 % 45 71 186
30 % 45 71 201
Entity #2 | Chains: B
ATPase beta subunit protein, length: 498 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 32167
95 % 1 2 26200 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 25314
70 % 46 72 143
50 % 46 72 173
40 % 46 72 187
30 % 46 72 202

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures