Sequence Similarity Clusters for the Entities in PDB 1KMC

Entity #1 | Chains: A,B
Caspase-7 protein, length: 303 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37827
95 % 14 19 1458 Flexibility: Low
Max RMSD: 7.2, Avg RMSD: 2.0
PDBFlex
90 % 14 19 1481
70 % 14 19 1485
50 % 73 78 426
40 % 95 101 248
30 % 103 113 228
Entity #2 | Chains: C,D
X-LINKED INHIBITOR OF APOPTOSIS PROTEIN protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 24467
95 % 3 4 11171
90 % 3 4 11019
70 % 3 4 10451
50 % 3 4 9451
40 % 3 4 8642
30 % 3 4 7602

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures