Sequence Similarity Clusters for the Entities in PDB 1KMC

Entity #1 | Chains: A,B
Caspase-7 protein, length: 303 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 5864
95 % 14 19 1493 Flexibility: Low
Max RMSD: 7.2, Avg RMSD: 1.9
PDBFlex
90 % 14 19 1514
70 % 14 19 1532
50 % 73 78 429
40 % 99 108 247
30 % 103 113 243
Entity #2 | Chains: C,D
X-LINKED INHIBITOR OF APOPTOSIS PROTEIN protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 16686
95 % 3 4 11255
90 % 3 4 11107
70 % 3 4 10488
50 % 3 4 9446
40 % 3 4 8551
30 % 3 4 7391

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures