Sequence Similarity Clusters for the Entities in PDB 1KMC

Entity #1 | Chains: A,B
Caspase-7 protein, length: 303 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37037
95 % 13 18 1515 Flexibility: Low
Max RMSD: 7.2, Avg RMSD: 2.0
PDBFlex
90 % 13 18 1550
70 % 13 18 1554
50 % 72 77 418
40 % 94 100 247
30 % 102 112 223
Entity #2 | Chains: C,D
X-LINKED INHIBITOR OF APOPTOSIS PROTEIN protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 23899
95 % 3 4 10898
90 % 3 4 10747
70 % 3 4 10206
50 % 3 4 9242
40 % 3 4 8453
30 % 3 4 7445

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures