Sequence Similarity Clusters for the Entities in PDB 1KLU

Entity #1 | Chains: A
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 74 231
95 % 10 81 295
90 % 10 97 236
70 % 10 97 269
50 % 14 149 179
40 % 14 149 196
30 % 27 310 99
Entity #2 | Chains: B
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 38 568
95 % 3 41 720
90 % 10 76 339
70 % 13 140 163
50 % 14 149 178
40 % 14 149 195
30 % 28 310 99
Entity #3 | Chains: C
Triosephosphate isomerase peptide protein, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
ENTEROTOXIN TYPE C-3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 8918
95 % 2 29 1364 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.1
PDBFlex
90 % 2 29 1388
70 % 2 29 1407
50 % 5 57 492
40 % 6 60 478
30 % 15 89 323

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.