Sequence Similarity Clusters for the Entities in PDB 1KLU

Entity #1 | Chains: A
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 82 230
95 % 10 89 282
90 % 10 105 237
70 % 10 105 267
50 % 16 161 184
40 % 16 161 195
30 % 31 334 98
Entity #2 | Chains: B
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 38 596
95 % 3 41 753
90 % 10 84 328
70 % 15 152 161
50 % 16 161 183
40 % 16 161 194
30 % 32 334 98
Entity #3 | Chains: C
Triosephosphate isomerase peptide protein, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
ENTEROTOXIN TYPE C-3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 9308
95 % 2 29 1426 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.1
PDBFlex
90 % 2 29 1451
70 % 2 29 1456
50 % 5 57 511
40 % 6 60 501
30 % 15 89 350

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures