Sequence Similarity Clusters for the Entities in PDB 1KLG

Entity #1 | Chains: A
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 71 232
95 % 32 78 297 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 35 94 237
70 % 35 94 270
50 % 48 146 178
40 % 48 146 194
30 % 95 304 100
Entity #2 | Chains: B
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 38 563
95 % 15 41 704 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 30 73 344
70 % 46 137 163
50 % 48 146 177
40 % 48 146 193
30 % 96 304 100
Entity #3 | Chains: C
Triosephosphate isomerase peptide protein, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
ENTEROTOXIN TYPE C-3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 8734
95 % 21 29 1340 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.0
PDBFlex
90 % 21 29 1362
70 % 21 29 1379
50 % 31 56 488
40 % 33 59 473
30 % 49 88 318

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.