Sequence Similarity Clusters for the Entities in PDB 1KLG

Entity #1 | Chains: A
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 74 227
95 % 34 81 289 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 37 97 233
70 % 37 97 265
50 % 50 149 176
40 % 50 149 192
30 % 99 310 98
Entity #2 | Chains: B
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 38 567
95 % 15 41 715 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 32 76 333
70 % 48 140 161
50 % 50 149 175
40 % 50 149 191
30 % 100 310 98
Entity #3 | Chains: C
Triosephosphate isomerase peptide protein, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
ENTEROTOXIN TYPE C-3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 8839
95 % 21 29 1355 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.1
PDBFlex
90 % 21 29 1378
70 % 21 29 1396
50 % 31 56 492
40 % 33 59 482
30 % 49 88 322

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.