Sequence Similarity Clusters for the Entities in PDB 1KKQ

Entity #1 | Chains: A,B,C,D
PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR protein, length: 269 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 16 1679
95 % 17 18 1860 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.8
PDBFlex
90 % 17 18 1904
70 % 56 57 415
50 % 215 217 104
40 % 215 217 129
30 % 977 983 10
Entity #2 | Chains: E,F,G,H
NUCLEAR RECEPTOR CO-REPRESSOR 2 protein, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.