Sequence Similarity Clusters for the Entities in PDB 1KKQ

Entity #1 | Chains: A,B,C,D
PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR protein, length: 269 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 16 1614
95 % 17 18 1792 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.8
PDBFlex
90 % 17 18 1835
70 % 56 57 406
50 % 210 212 103
40 % 210 212 127
30 % 930 936 10
Entity #2 | Chains: E,F,G,H
NUCLEAR RECEPTOR CO-REPRESSOR 2 protein, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.