Sequence Similarity Clusters for the Entities in PDB 1KKQ

Entity #1 | Chains: A,B,C,D
PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR protein, length: 269 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 18 1664
95 % 17 18 1969 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.8
PDBFlex
90 % 17 18 2010
70 % 57 58 449
50 % 225 227 107
40 % 225 227 130
30 % 1250 1261 8
Entity #2 | Chains: E,F,G,H
NUCLEAR RECEPTOR CO-REPRESSOR 2 protein, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures