Sequence Similarity Clusters for the Entities in PDB 1KKQ

Entity #1 | Chains: A,B,C,D
PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR protein, length: 269 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 16 1726
95 % 17 18 1903 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.6
PDBFlex
90 % 17 18 1948
70 % 56 57 434
50 % 222 224 102
40 % 222 224 126
30 % 997 1004 10
Entity #2 | Chains: E,F,G,H
NUCLEAR RECEPTOR CO-REPRESSOR 2 protein, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures