Sequence Similarity Clusters for the Entities in PDB 1KKM

Entity #1 | Chains: A,B,C
HprK protein protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 10303
95 % 2 4 3232 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.7
PDBFlex
90 % 2 4 3280
70 % 2 4 3248
50 % 2 4 3173
40 % 2 4 3094
30 % 2 4 2899
Entity #2 | Chains: H,I,J
PHOSPHOCARRIER PROTEIN HPR protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 13669
95 % 1 2 12980 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 2 12767
70 % 1 2 11984
50 % 1 2 10690
40 % 1 2 9700
30 % 1 2 8442

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.