Sequence Similarity Clusters for the Entities in PDB 1KKM

Entity #1 | Chains: A,B,C
HprK protein protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 3184
95 % 2 4 3499 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.7
PDBFlex
90 % 2 4 3567
70 % 2 4 3514
50 % 2 4 3429
40 % 2 4 3291
30 % 2 4 3044
Entity #2 | Chains: H,I,J
PHOSPHOCARRIER PROTEIN HPR protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 14539
95 % 1 2 13638 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 2 13401
70 % 1 2 12563
50 % 1 2 11174
40 % 1 2 10042
30 % 1 2 8569

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures