Sequence Similarity Clusters for the Entities in PDB 1KKM

Entity #1 | Chains: A,B,C
HprK protein protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 10432
95 % 2 4 3278 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.7
PDBFlex
90 % 2 4 3322
70 % 2 4 3294
50 % 2 4 3217
40 % 2 4 3132
30 % 2 4 2940
Entity #2 | Chains: H,I,J
PHOSPHOCARRIER PROTEIN HPR protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 13854
95 % 1 2 13165 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 2 12950
70 % 1 2 12196
50 % 1 2 10875
40 % 1 2 9867
30 % 1 2 8594

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.