Sequence Similarity Clusters for the Entities in PDB 1KKL

Entity #1 | Chains: A,B,C
HprK protein protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 10753
95 % 3 4 3395 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.7
PDBFlex
90 % 3 4 3443
70 % 3 4 3402
50 % 3 4 3313
40 % 3 4 3221
30 % 3 4 3015
Entity #2 | Chains: H,I,J
PHOSPHOCARRIER PROTEIN HPR protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 14277
95 % 2 2 13526 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 2 13300
70 % 2 2 12512
50 % 2 2 11154
40 % 2 2 10110
30 % 2 2 8809

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures