Sequence Similarity Clusters for the Entities in PDB 1KJY

Entity #1 | Chains: A,C
GUANINE NUCLEOTIDE-BINDING PROTEIN G(I), ALPHA-1 SUBUNIT protein, length: 325 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 11429
95 % 38 45 781 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 1.7
PDBFlex
90 % 42 51 612
70 % 53 66 439
50 % 57 77 451
40 % 66 103 383
30 % 66 103 386
Entity #2 | Chains: B,D
REGULATOR OF G-PROTEIN SIGNALING 14 protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 9990
95 % 4 4 9772 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.7
PDBFlex
90 % 4 4 9650
70 % 4 4 9201
50 % 4 4 8373
40 % 4 4 7636
30 % 4 4 6621

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures