Sequence Similarity Clusters for the Entities in PDB 1KJV

Entity #1 | Chains: A
Mature alpha chain of major histocompatibility complex class I antigen (HEAVY CHAIN) protein, length: 284 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55561
95 % 1 1 39648
90 % 1 1 37909
70 % 27 684 6
50 % 27 689 6
40 % 28 739 10
30 % 28 856 15
Entity #2 | Chains: B
beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 7301
95 % 1 6 7847 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 1 6 7805
70 % 35 875 4
50 % 36 897 4
40 % 36 897 9
30 % 36 897 14
Entity #3 | Chains: P
peptide NPR protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.