Sequence Similarity Clusters for the Entities in PDB 1KJV

Entity #1 | Chains: A
Mature alpha chain of major histocompatibility complex class I antigen (HEAVY CHAIN) protein, length: 284 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57852
95 % 1 1 41266
90 % 1 1 39398
70 % 27 727 6
50 % 27 732 6
40 % 28 783 10
30 % 29 909 15
Entity #2 | Chains: B
beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 7638
95 % 1 6 8189 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 1 6 8135
70 % 36 924 4
50 % 37 946 3
40 % 37 946 7
30 % 37 946 12
Entity #3 | Chains: P
peptide NPR protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures