Sequence Similarity Clusters for the Entities in PDB 1KJV

Entity #1 | Chains: A
Mature alpha chain of major histocompatibility complex class I antigen (HEAVY CHAIN) protein, length: 284 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56352
95 % 1 1 40222
90 % 1 1 38440
70 % 27 705 6
50 % 27 710 6
40 % 28 761 10
30 % 28 881 15
Entity #2 | Chains: B
beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 7400
95 % 1 6 7967 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 1 6 7923
70 % 35 898 4
50 % 36 920 3
40 % 36 920 8
30 % 36 920 12
Entity #3 | Chains: P
peptide NPR protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.