Sequence Similarity Clusters for the Entities in PDB 1KJM

Entity #1 | Chains: A
RT1 class I histocompatibility antigen, AA alpha chain, heavy chain protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 25673
95 % 1 2 21530
90 % 1 2 20934
70 % 511 679 6
50 % 512 684 6
40 % 549 734 10
30 % 595 851 15
Entity #2 | Chains: B
beta-2-Microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 7178
95 % 3 6 7712 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 3 6 7671
70 % 627 870 4
50 % 639 892 4
40 % 639 892 8
30 % 639 892 14
Entity #3 | Chains: P
B6 Peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.