Sequence Similarity Clusters for the Entities in PDB 1KJM

Entity #1 | Chains: A
RT1 class I histocompatibility antigen, AA alpha chain, heavy chain protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27214
95 % 1 2 23883 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 1 2 23116
70 % 550 740 6
50 % 559 754 7
40 % 591 806 9
30 % 647 930 12
Entity #2 | Chains: B
beta-2-Microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 8350
95 % 3 6 8404 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 3 6 8328
70 % 673 944 4
50 % 685 966 3
40 % 685 966 6
30 % 685 966 9
Entity #3 | Chains: P
B6 Peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures