Sequence Similarity Clusters for the Entities in PDB 1KJM

Entity #1 | Chains: A
RT1 class I histocompatibility antigen, AA alpha chain, heavy chain protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26832
95 % 1 2 22504 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 1 2 21855
70 % 535 719 6
50 % 536 724 6
40 % 574 775 10
30 % 626 899 15
Entity #2 | Chains: B
beta-2-Microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 7507
95 % 3 6 8073 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 3 6 8021
70 % 655 916 4
50 % 667 938 3
40 % 667 938 7
30 % 667 938 12
Entity #3 | Chains: P
B6 Peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures