Sequence Similarity Clusters for the Entities in PDB 1KJM

Entity #1 | Chains: A
RT1 class I histocompatibility antigen, AA alpha chain, heavy chain protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26467
95 % 1 2 22211 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 1 2 21577
70 % 524 699 6
50 % 525 704 6
40 % 563 755 10
30 % 612 875 15
Entity #2 | Chains: B
beta-2-Microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 7393
95 % 3 6 7958 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 3 6 7914
70 % 642 892 4
50 % 654 914 4
40 % 654 914 8
30 % 654 914 12
Entity #3 | Chains: P
B6 Peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.