Sequence Similarity Clusters for the Entities in PDB 1KJM

Entity #1 | Chains: A
RT1 class I histocompatibility antigen, AA alpha chain, heavy chain protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26092
95 % 1 2 21872 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 2 21255
70 % 519 687 6
50 % 520 692 6
40 % 557 742 10
30 % 603 859 15
Entity #2 | Chains: B
beta-2-Microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 7315
95 % 3 6 7862 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 3 6 7818
70 % 635 878 4
50 % 647 900 3
40 % 647 900 8
30 % 647 900 14
Entity #3 | Chains: P
B6 Peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.