Sequence Similarity Clusters for the Entities in PDB 1KJ7

Entity #1 | Chains: A,B
POL POLYPROTEIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 3061
95 % 463 590 2 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 503 652 3
70 % 522 679 5
50 % 532 705 5
40 % 542 715 9
30 % 544 717 14
Entity #2 | Chains: P
gag polyprotein protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures