Sequence Similarity Clusters for the Entities in PDB 1KJ7

Entity #1 | Chains: A,B
POL POLYPROTEIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 2892
95 % 448 577 2 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 488 639 2
70 % 507 666 5
50 % 517 692 5
40 % 527 702 9
30 % 529 704 14
Entity #2 | Chains: P
gag polyprotein protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.