Sequence Similarity Clusters for the Entities in PDB 1KJ3

Entity #1 | Chains: H,I
H-2KB MHC CLASS I MOLECULE ALPHA CHAIN protein, length: 279 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 25 49 409
95 % 37 65 364 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 39 70 366
70 % 431 716 6
50 % 432 721 6
40 % 465 772 10
30 % 505 896 15
Entity #2 | Chains: P,Q
NATURALLY PROCESSED OCTAPEPTIDE PKB1 protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: L,M
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 135 94
95 % 104 228 60 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 104 228 65
70 % 526 912 4
50 % 538 934 3
40 % 538 934 7
30 % 538 934 12

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.