Sequence Similarity Clusters for the Entities in PDB 1KJ3

Entity #1 | Chains: H,I
H-2KB MHC CLASS I MOLECULE ALPHA CHAIN protein, length: 279 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 49 403
95 % 37 65 358
90 % 39 70 361
70 % 419 692 6
50 % 420 697 6
40 % 453 748 10
30 % 490 868 15
Entity #2 | Chains: P,Q
NATURALLY PROCESSED OCTAPEPTIDE PKB1 protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: L,M
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 133 95
95 % 98 217 64
90 % 98 217 68
70 % 512 885 4
50 % 524 907 3
40 % 524 907 9
30 % 524 907 14

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.