Sequence Similarity Clusters for the Entities in PDB 1KJ3

Entity #1 | Chains: H,I
H-2KB MHC CLASS I MOLECULE ALPHA CHAIN protein, length: 279 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 53 457
95 % 37 65 437 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 39 70 407
70 % 456 755 6
50 % 465 769 7
40 % 492 821 9
30 % 535 948 12
Entity #2 | Chains: P,Q
NATURALLY PROCESSED OCTAPEPTIDE PKB1 protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: L,M
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 84 189 89
95 % 104 234 64 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 104 234 68
70 % 553 962 4
50 % 565 984 3
40 % 565 984 6
30 % 565 984 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures