Sequence Similarity Clusters for the Entities in PDB 1KJ3

Entity #1 | Chains: H,I
H-2KB MHC CLASS I MOLECULE ALPHA CHAIN protein, length: 279 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 25 49 374
95 % 37 65 348 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 39 70 353
70 % 412 679 6
50 % 413 684 6
40 % 445 734 10
30 % 479 851 15
Entity #2 | Chains: P,Q
NATURALLY PROCESSED OCTAPEPTIDE PKB1 protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: L,M
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 133 95
95 % 96 215 64 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 96 215 68
70 % 503 870 4
50 % 515 892 4
40 % 515 892 8
30 % 515 892 14

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.