Sequence Similarity Clusters for the Entities in PDB 1KJ3

Entity #1 | Chains: H,I
H-2KB MHC CLASS I MOLECULE ALPHA CHAIN protein, length: 279 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 53 499
95 % 37 65 465 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 39 70 439
70 % 471 777 6
50 % 482 793 7
40 % 509 845 9
30 % 559 983 12
Entity #2 | Chains: P,Q
NATURALLY PROCESSED OCTAPEPTIDE PKB1 protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: L,M
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 88 197 88
95 % 109 243 70 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 109 243 73
70 % 575 996 4
50 % 589 1020 3
40 % 589 1020 6
30 % 589 1020 10

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures