Sequence Similarity Clusters for the Entities in PDB 1KJ2

Entity #1 | Chains: H,I
Allogeneic H-2Kb MHC Class I Molecule protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 49 435
95 % 49 65 414 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 53 70 389
70 % 612 736 6
50 % 622 750 6
40 % 653 792 10
30 % 722 923 15
Entity #2 | Chains: P,Q
Naturally processed octapeptide PKB1 protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: L,M
Beta-2 microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 101 136 98
95 % 162 234 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 162 234 66
70 % 750 940 4
50 % 763 962 3
40 % 763 962 7
30 % 763 962 12
Entity #4 | Chains: A,D
KB5-C20 T-Cell receptor alpha-chain protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 30354
95 % 2 2 25150 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 2 2 24305
70 % 5 5 7974
50 % 5 5 7338
40 % 676 963 5
30 % 752 1093 7
Entity #5 | Chains: B,E
KB5-C20 T-Cell receptor beta-chain protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 30323
95 % 2 2 25126 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 2.0
PDBFlex
90 % 2 2 24282
70 % 3 5 12597
50 % 3 5 11226
40 % 3 5 10165
30 % 753 1093 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures