Sequence Similarity Clusters for the Entities in PDB 1KJ2

Entity #1 | Chains: H,I
Allogeneic H-2Kb MHC Class I Molecule protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 49 394
95 % 49 65 352 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 53 70 356
70 % 574 681 7
50 % 576 686 6
40 % 614 736 10
30 % 673 853 15
Entity #2 | Chains: P,Q
Naturally processed octapeptide PKB1 protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: L,M
Beta-2 microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 100 133 95
95 % 148 215 64 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 148 215 68
70 % 704 872 4
50 % 717 894 4
40 % 717 894 8
30 % 717 894 14
Entity #4 | Chains: A,D
KB5-C20 T-Cell receptor alpha-chain protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28389
95 % 2 2 23552 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 2 2 22800
70 % 5 5 7455
50 % 5 5 6864
40 % 630 884 5
30 % 704 1010 7
Entity #5 | Chains: B,E
KB5-C20 T-Cell receptor beta-chain protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28358
95 % 2 2 23529 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 2.0
PDBFlex
90 % 2 2 22778
70 % 3 5 11780
50 % 3 5 10529
40 % 3 5 9548
30 % 705 1010 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.