Sequence Similarity Clusters for the Entities in PDB 1KJ2

Entity #1 | Chains: H,I
Allogeneic H-2Kb MHC Class I Molecule protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 49 403
95 % 49 65 358
90 % 53 70 361
70 % 581 692 6
50 % 583 697 6
40 % 622 748 10
30 % 684 868 15
Entity #2 | Chains: P,Q
Naturally processed octapeptide PKB1 protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: L,M
Beta-2 microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 133 95
95 % 150 217 64
90 % 150 217 68
70 % 713 885 4
50 % 726 907 3
40 % 726 907 9
30 % 726 907 14
Entity #4 | Chains: A,D
KB5-C20 T-Cell receptor alpha-chain protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 28877
95 % 2 2 23964
90 % 2 2 23195
70 % 5 5 7601
50 % 5 5 6992
40 % 641 897 5
30 % 715 1023 7
Entity #5 | Chains: B,E
KB5-C20 T-Cell receptor beta-chain protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 28846
95 % 2 2 23941
90 % 2 2 23173
70 % 3 5 12018
50 % 3 5 10726
40 % 3 5 9730
30 % 716 1023 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.