Sequence Similarity Clusters for the Entities in PDB 1KJ2

Entity #1 | Chains: H,I
Allogeneic H-2Kb MHC Class I Molecule protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 49 410
95 % 49 65 366 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 53 70 368
70 % 597 716 6
50 % 599 721 6
40 % 638 772 10
30 % 703 896 15
Entity #2 | Chains: P,Q
Naturally processed octapeptide PKB1 protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: L,M
Beta-2 microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 100 135 96
95 % 158 228 60 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 158 228 65
70 % 731 912 4
50 % 744 934 3
40 % 744 934 7
30 % 744 934 12
Entity #4 | Chains: A,D
KB5-C20 T-Cell receptor alpha-chain protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29300
95 % 2 2 24309 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 2 2 23522
70 % 5 5 7708
50 % 5 5 7088
40 % 660 929 5
30 % 735 1056 7
Entity #5 | Chains: B,E
KB5-C20 T-Cell receptor beta-chain protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29268
95 % 2 2 24285 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 2.0
PDBFlex
90 % 2 2 23499
70 % 3 5 12176
50 % 3 5 10859
40 % 3 5 9847
30 % 736 1056 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.