Sequence Similarity Clusters for the Entities in PDB 1KJ2

Entity #1 | Chains: H,I
Allogeneic H-2Kb MHC Class I Molecule protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 49 367
95 % 49 65 344
90 % 53 70 349
70 % 559 664 7
50 % 561 669 7
40 % 597 717 10
30 % 656 834 15
Entity #2 | Chains: P,Q
Naturally processed octapeptide PKB1 protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: L,M
Beta-2 microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 98 131 95
95 % 146 213 66
90 % 146 213 70
70 % 692 859 5
50 % 703 879 5
40 % 703 879 9
30 % 703 879 14
Entity #4 | Chains: A,D
KB5-C20 T-Cell receptor alpha-chain protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 27739
95 % 2 2 22998
90 % 2 2 22273
70 % 5 5 7264
50 % 5 5 6701
40 % 607 848 5
30 % 681 974 7
Entity #5 | Chains: B,E
KB5-C20 T-Cell receptor beta-chain protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 27708
95 % 2 2 22974
90 % 2 2 22250
70 % 3 5 11504
50 % 3 5 10311
40 % 3 5 9339
30 % 682 974 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.