Sequence Similarity Clusters for the Entities in PDB 1KJ2

Entity #1 | Chains: H,I
Allogeneic H-2Kb MHC Class I Molecule protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 49 429
95 % 49 65 397 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 53 70 371
70 % 604 727 6
50 % 606 732 6
40 % 645 783 10
30 % 712 909 15
Entity #2 | Chains: P,Q
Naturally processed octapeptide PKB1 protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: L,M
Beta-2 microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 100 135 97
95 % 160 230 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 160 230 65
70 % 738 924 4
50 % 751 946 3
40 % 751 946 7
30 % 751 946 12
Entity #4 | Chains: A,D
KB5-C20 T-Cell receptor alpha-chain protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29905
95 % 2 2 24782 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 2 2 23954
70 % 5 5 7838
50 % 5 5 7213
40 % 671 945 5
30 % 747 1074 7
Entity #5 | Chains: B,E
KB5-C20 T-Cell receptor beta-chain protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29874
95 % 2 2 24758 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 2.0
PDBFlex
90 % 2 2 23931
70 % 3 5 12401
50 % 3 5 11056
40 % 3 5 10018
30 % 748 1074 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures