Sequence Similarity Clusters for the Entities in PDB 1KJ1

Entity #1 | Chains: A,P
lectin I protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47533
95 % 1 3 20758 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 6 9903
70 % 2 7 7253
50 % 12 20 1356
40 % 20 34 697
30 % 21 38 586
Entity #2 | Chains: D,Q
lectin II protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47534
95 % 1 3 20756 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 6 9903
70 % 3 7 7253
50 % 13 20 1356
40 % 21 34 697
30 % 22 38 586

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures