Sequence Similarity Clusters for the Entities in PDB 1KIX

Entity #1 | Chains: D
5'-D(*T*TP*TP*TP*GP*GP*GP*G)-3' dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
Telomere-Binding Protein alpha Subunit protein, length: 495 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 15 3596
95 % 10 15 4374 Flexibility: Low
Max RMSD: 12.1, Avg RMSD: 2.0
PDBFlex
90 % 10 15 4403
70 % 10 15 4323
50 % 10 15 4160
40 % 10 15 3982
30 % 10 15 3690

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures