Sequence Similarity Clusters for the Entities in PDB 1KIU

Entity #1 | Chains: A,C,E,G,I,K,M,O
CHAPERONE PROTEIN FimC protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 3302
95 % 8 11 1385 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.0
PDBFlex
90 % 8 11 1406
70 % 8 11 1411
50 % 9 12 1405
40 % 9 12 1419
30 % 39 42 585
Entity #2 | Chains: B,D,F,H,J,L,N,P
FimH PROTEIN protein, length: 279 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 8502
95 % 14 15 1030 Flexibility: Medium
Max RMSD: 16.9, Avg RMSD: 7.3
PDBFlex
90 % 14 15 1049
70 % 14 15 1086
50 % 14 15 1127
40 % 14 15 1144
30 % 14 15 1123

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.