Sequence Similarity Clusters for the Entities in PDB 1KIU

Entity #1 | Chains: A,C,E,G,I,K,M,O
CHAPERONE PROTEIN FimC protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 2085
95 % 8 11 1483 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.0
PDBFlex
90 % 8 11 1498
70 % 8 11 1507
50 % 9 12 1496
40 % 9 12 1486
30 % 40 43 622
Entity #2 | Chains: B,D,F,H,J,L,N,P
FimH PROTEIN protein, length: 279 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 1245
95 % 14 15 1111 Flexibility: Medium
Max RMSD: 16.9, Avg RMSD: 7.1
PDBFlex
90 % 14 15 1139
70 % 14 15 1178
50 % 14 15 1224
40 % 14 15 1218
30 % 14 15 1218

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures