Sequence Similarity Clusters for the Entities in PDB 1KIU

Entity #1 | Chains: A,C,E,G,I,K,M,O
CHAPERONE PROTEIN FimC protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 3411
95 % 8 11 1420 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.0
PDBFlex
90 % 8 11 1443
70 % 8 11 1448
50 % 9 12 1439
40 % 9 12 1448
30 % 39 42 597
Entity #2 | Chains: B,D,F,H,J,L,N,P
FimH PROTEIN protein, length: 279 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 8729
95 % 14 15 1057 Flexibility: Medium
Max RMSD: 16.9, Avg RMSD: 7.1
PDBFlex
90 % 14 15 1080
70 % 14 15 1119
50 % 14 15 1159
40 % 14 15 1175
30 % 14 15 1157

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures