Sequence Similarity Clusters for the Entities in PDB 1KIQ

Entity #1 | Chains: A
MONOCLONAL ANTIBODY D1.3 protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 12 6135
95 % 6 17 3962 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 6 21 3159
70 % 47 215 66
50 % 68 319 21
40 % 76 363 27
30 % 903 7269 1
Entity #2 | Chains: B
MONOCLONAL ANTIBODY D1.3 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 15 4420
95 % 6 17 3993 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 6 17 3993
70 % 17 76 543
50 % 137 613 6
40 % 729 5834 1
30 % 904 7269 1
Entity #3 | Chains: C
LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 431 717 3
95 % 443 734 3 Flexibility: No
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 450 751 5
70 % 622 974 7
50 % 624 982 8
40 % 630 1017 10
30 % 630 1017 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures