Sequence Similarity Clusters for the Entities in PDB 1KIP

Entity #1 | Chains: A
MONOCLONAL ANTIBODY D1.3 protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 14232
95 % 16 17 3900 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 16 21 3104
70 % 68 192 74
50 % 104 309 23
40 % 310 948 5
30 % 349 1077 7
Entity #2 | Chains: B
MONOCLONAL ANTIBODY D1.3 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 69367
95 % 16 17 3896 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 16 17 3944
70 % 16 36 1276
50 % 195 594 7
40 % 311 948 5
30 % 350 1077 7
Entity #3 | Chains: C
LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 489 666 3
95 % 538 719 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 547 736 5
70 % 739 956 7
50 % 743 964 8
40 % 755 998 11
30 % 755 998 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures