Sequence Similarity Clusters for the Entities in PDB 1KIP

Entity #1 | Chains: A
MONOCLONAL ANTIBODY D1.3 protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 13784
95 % 16 17 3771 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 16 21 2993
70 % 68 191 72
50 % 103 305 21
40 % 300 916 5
30 % 338 1042 7
Entity #2 | Chains: B
MONOCLONAL ANTIBODY D1.3 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 67508
95 % 16 17 3767 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 16 17 3811
70 % 16 36 1238
50 % 186 566 7
40 % 301 916 5
30 % 339 1042 7
Entity #3 | Chains: C
LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 478 655 3
95 % 527 708 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 536 725 5
70 % 725 942 7
50 % 729 950 8
40 % 741 984 11
30 % 741 984 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.