Sequence Similarity Clusters for the Entities in PDB 1KIP

Entity #1 | Chains: A
MONOCLONAL ANTIBODY D1.3 protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 12 6476
95 % 16 17 4196 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 16 21 3334
70 % 74 223 72
50 % 106 339 19
40 % 118 383 27
30 % 1635 7653 1
Entity #2 | Chains: B
MONOCLONAL ANTIBODY D1.3 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63884
95 % 16 17 4234 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 16 17 4279
70 % 28 76 578
50 % 207 659 6
40 % 1345 6175 1
30 % 1636 7653 1
Entity #3 | Chains: C
LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 563 750 3
95 % 578 767 3 Flexibility: No
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 587 784 5
70 % 782 1008 7
50 % 787 1017 8
40 % 800 1052 10
30 % 800 1052 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures