Sequence Similarity Clusters for the Entities in PDB 1KIP

Entity #1 | Chains: A
MONOCLONAL ANTIBODY D1.3 protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 12 6301
95 % 16 17 4091 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 16 21 3245
70 % 74 218 70
50 % 106 329 20
40 % 118 373 27
30 % 1613 7481 1
Entity #2 | Chains: B
MONOCLONAL ANTIBODY D1.3 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62882
95 % 16 17 4128 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 16 17 4179
70 % 28 76 568
50 % 206 637 6
40 % 1323 6024 1
30 % 1614 7481 1
Entity #3 | Chains: C
LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 554 740 3
95 % 569 757 3 Flexibility: No
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 578 774 5
70 % 773 998 7
50 % 778 1007 8
40 % 791 1042 10
30 % 791 1042 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures