Sequence Similarity Clusters for the Entities in PDB 1KIL

Entity #1 | Chains: A
Synaptobrevin SNARE motif protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 12 3599
95 % 2 12 4379 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 2 12 4402
70 % 2 12 4328
50 % 2 12 4170
40 % 2 12 3977
30 % 4 14 2909
Entity #2 | Chains: B
Syntaxin SNARE motif short protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 18 1209
95 % 5 18 1622 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 1.2
PDBFlex
90 % 5 18 1656
70 % 5 18 1677
50 % 6 19 1555
40 % 6 19 1579
30 % 7 21 1421
Entity #3 | Chains: C
SNAP-25 N-terminal SNARE motif protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 15 1392
95 % 4 15 1870 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.1
PDBFlex
90 % 5 16 1748
70 % 5 16 1772
50 % 5 17 1715
40 % 5 17 1732
30 % 5 17 1678
Entity #4 | Chains: D
SNAP-25 C-terminal SNARE motif protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 13 1691
95 % 5 14 2143 Flexibility: Low
Max RMSD: 17.3, Avg RMSD: 2.0
PDBFlex
90 % 5 14 2201
70 % 5 15 1823
50 % 5 17 1599
40 % 5 19 1363
30 % 6 20 1319
Entity #5 | Chains: E
Complexin I SNARE-complex binding region protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71319
95 % 1 1 49543
90 % 1 1 47058
70 % 1 1 41438
50 % 1 1 35439
40 % 1 1 31211
30 % 1 1 26377

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.