Sequence Similarity Clusters for the Entities in PDB 1KIL

Entity #1 | Chains: A
Synaptobrevin SNARE motif protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 12 4384
95 % 2 12 4705 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 2 12 4737
70 % 2 12 4621
50 % 2 12 4436
40 % 2 12 4186
30 % 4 14 3048
Entity #2 | Chains: B
Syntaxin SNARE motif short protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 20 1409
95 % 7 20 1669 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 1.2
PDBFlex
90 % 7 20 1706
70 % 7 20 1713
50 % 8 21 1574
40 % 8 21 1568
30 % 9 23 1430
Entity #3 | Chains: C
SNAP-25 N-terminal SNARE motif protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 17 1578
95 % 6 17 1856 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.0
PDBFlex
90 % 7 18 1764
70 % 7 18 1774
50 % 7 19 1763
40 % 7 19 1756
30 % 7 19 1714
Entity #4 | Chains: D
SNAP-25 C-terminal SNARE motif protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 16 1764
95 % 7 16 2098 Flexibility: Low
Max RMSD: 17.3, Avg RMSD: 1.9
PDBFlex
90 % 7 16 2148
70 % 7 17 1828
50 % 7 17 1865
40 % 7 17 1848
30 % 7 17 1786
Entity #5 | Chains: E
Complexin I SNARE-complex binding region protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59039
95 % 1 1 48263
90 % 1 1 45833
70 % 1 1 40206
50 % 1 1 34108
40 % 1 1 29868
30 % 1 1 25052

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures