Sequence Similarity Clusters for the Entities in PDB 1KIL

Entity #1 | Chains: A
Synaptobrevin SNARE motif protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 12 3663
95 % 2 12 4446
90 % 2 12 4467
70 % 2 12 4396
50 % 2 12 4234
40 % 2 12 4038
30 % 4 14 2951
Entity #2 | Chains: B
Syntaxin SNARE motif short protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 20 1142
95 % 7 20 1553
90 % 7 20 1580
70 % 7 20 1597
50 % 8 21 1486
40 % 8 21 1505
30 % 9 23 1369
Entity #3 | Chains: C
SNAP-25 N-terminal SNARE motif protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 17 1291
95 % 6 17 1743
90 % 7 18 1645
70 % 7 18 1662
50 % 7 19 1633
40 % 7 19 1652
30 % 7 19 1619
Entity #4 | Chains: D
SNAP-25 C-terminal SNARE motif protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 15 1586
95 % 7 16 1973
90 % 7 16 2021
70 % 7 17 1708
50 % 7 19 1523
40 % 7 21 1325
30 % 8 22 1279
Entity #5 | Chains: E
Complexin I SNARE-complex binding region protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72346
95 % 1 1 50291
90 % 1 1 47747
70 % 1 1 41962
50 % 1 1 35825
40 % 1 1 31537
30 % 1 1 26651

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.