Sequence Similarity Clusters for the Entities in PDB 1KIL

Entity #1 | Chains: A
Synaptobrevin SNARE motif protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 12 3839
95 % 2 12 4637 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 2 12 4657
70 % 2 12 4562
50 % 2 12 4377
40 % 2 12 4174
30 % 4 14 3054
Entity #2 | Chains: B
Syntaxin SNARE motif short protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 20 1205
95 % 7 20 1616 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 1.3
PDBFlex
90 % 7 20 1647
70 % 7 20 1666
50 % 8 21 1534
40 % 8 21 1549
30 % 9 23 1407
Entity #3 | Chains: C
SNAP-25 N-terminal SNARE motif protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 17 1356
95 % 6 17 1811 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.1
PDBFlex
90 % 7 18 1719
70 % 7 18 1734
50 % 7 19 1700
40 % 7 19 1717
30 % 7 19 1681
Entity #4 | Chains: D
SNAP-25 C-terminal SNARE motif protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 15 1657
95 % 7 16 2060 Flexibility: Low
Max RMSD: 17.3, Avg RMSD: 2.1
PDBFlex
90 % 7 16 2111
70 % 7 17 1782
50 % 7 19 1575
40 % 7 21 1364
30 % 8 22 1323
Entity #5 | Chains: E
Complexin I SNARE-complex binding region protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74642
95 % 1 1 51817
90 % 1 1 49126
70 % 1 1 43066
50 % 1 1 36718
40 % 1 1 32308
30 % 1 1 27302

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures