Sequence Similarity Clusters for the Entities in PDB 1KIL

Entity #1 | Chains: A
Synaptobrevin SNARE motif protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 12 3749
95 % 2 12 4538 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 2 12 4558
70 % 2 12 4470
50 % 2 12 4294
40 % 2 12 4099
30 % 4 14 2994
Entity #2 | Chains: B
Syntaxin SNARE motif short protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 20 1173
95 % 7 20 1580 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 1.3
PDBFlex
90 % 7 20 1608
70 % 7 20 1621
50 % 8 21 1505
40 % 8 21 1519
30 % 9 23 1381
Entity #3 | Chains: C
SNAP-25 N-terminal SNARE motif protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 17 1322
95 % 6 17 1765 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.1
PDBFlex
90 % 7 18 1672
70 % 7 18 1690
50 % 7 19 1654
40 % 7 19 1671
30 % 7 19 1637
Entity #4 | Chains: D
SNAP-25 C-terminal SNARE motif protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 15 1617
95 % 7 16 2000 Flexibility: Low
Max RMSD: 17.3, Avg RMSD: 2.1
PDBFlex
90 % 7 16 2049
70 % 7 17 1734
50 % 7 19 1543
40 % 7 21 1341
30 % 8 22 1293
Entity #5 | Chains: E
Complexin I SNARE-complex binding region protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73371
95 % 1 1 51014
90 % 1 1 48409
70 % 1 1 42469
50 % 1 1 36227
40 % 1 1 31893
30 % 1 1 26964

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.