Sequence Similarity Clusters for the Entities in PDB 1KI1

Entity #1 | Chains: A,C
G25K GTP-binding protein, placental isoform protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 22 1419
95 % 15 37 914 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.6
PDBFlex
90 % 15 37 947
70 % 36 78 327
50 % 74 137 194
40 % 75 138 208
30 % 511 782 16
Entity #2 | Chains: B,D
intersectin long form protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34833
95 % 1 2 16677 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.1
PDBFlex
90 % 1 2 16350
70 % 1 2 15240
50 % 1 2 13394
40 % 1 2 12049
30 % 1 2 10416

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.