Sequence Similarity Clusters for the Entities in PDB 1KI1

Entity #1 | Chains: A,C
G25K GTP-binding protein, placental isoform protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 23 1381
95 % 15 39 904 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.6
PDBFlex
90 % 15 39 934
70 % 36 82 326
50 % 77 143 193
40 % 78 144 203
30 % 538 817 16
Entity #2 | Chains: B,D
intersectin long form protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35605
95 % 1 2 17034 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.1
PDBFlex
90 % 1 2 16703
70 % 1 2 15567
50 % 1 2 13664
40 % 1 2 12284
30 % 1 2 10617

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures