Sequence Similarity Clusters for the Entities in PDB 1KI1

Entity #1 | Chains: A,C
G25K GTP-binding protein, placental isoform protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 23 1407
95 % 15 39 911 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.6
PDBFlex
90 % 15 39 943
70 % 36 82 332
50 % 77 143 196
40 % 78 144 205
30 % 542 822 16
Entity #2 | Chains: B,D
intersectin long form protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36039
95 % 1 2 17267 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.1
PDBFlex
90 % 1 2 16927
70 % 1 2 15763
50 % 1 2 13835
40 % 1 2 12433
30 % 1 2 10744

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures