Sequence Similarity Clusters for the Entities in PDB 1KGY

Entity #1 | Chains: A,B,C,D
EPHRIN TYPE-B RECEPTOR 2 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13760
95 % 4 4 10989 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.9
PDBFlex
90 % 4 4 10840
70 % 4 4 10282
50 % 15 18 1072
40 % 22 25 920
30 % 22 25 909
Entity #2 | Chains: E,F,G,H
EPHRIN-B2 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23935
95 % 5 8 5384 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 5 8 5410
70 % 5 8 5309
50 % 5 9 4402
40 % 5 9 4189
30 % 10 16 1748

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures