Sequence Similarity Clusters for the Entities in PDB 1KGY

Entity #1 | Chains: A,B,C,D
EPHRIN TYPE-B RECEPTOR 2 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13287
95 % 4 4 10626 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.9
PDBFlex
90 % 4 4 10479
70 % 4 4 9949
50 % 15 18 1047
40 % 22 25 896
30 % 22 25 887
Entity #2 | Chains: E,F,G,H
EPHRIN-B2 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23122
95 % 5 8 5202 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 5 8 5222
70 % 5 8 5130
50 % 5 9 4271
40 % 5 9 4081
30 % 10 16 1689

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures