Sequence Similarity Clusters for the Entities in PDB 1KG0

Entity #1 | Chains: A
MHC class II Receptor HLA-DR1 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 74 227
95 % 58 81 289
90 % 65 97 233
70 % 65 97 265
50 % 95 149 176
40 % 95 149 192
30 % 195 310 98
Entity #2 | Chains: B
MHC class II Receptor HLA-DR1 protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 38 567
95 % 32 41 715 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 56 76 333
70 % 91 140 161
50 % 95 149 175
40 % 95 149 191
30 % 196 310 98
Entity #3 | Chains: D
Hemagglutinin HA Peptide protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: C
gp42 Protein protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65535
95 % 1 1 45225
90 % 1 1 42923
70 % 1 1 37722
50 % 1 1 32115
40 % 1 1 28358
30 % 1 1 24043

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.