Sequence Similarity Clusters for the Entities in PDB 1KG0

Entity #1 | Chains: A
MHC class II Receptor HLA-DR1 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 74 233
95 % 58 81 298
90 % 65 97 239
70 % 65 97 273
50 % 95 149 180
40 % 95 149 196
30 % 195 310 100
Entity #2 | Chains: B
MHC class II Receptor HLA-DR1 protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 38 578
95 % 32 41 732 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 56 76 343
70 % 91 140 166
50 % 95 149 179
40 % 95 149 195
30 % 196 310 100
Entity #3 | Chains: D
Hemagglutinin HA Peptide protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: C
gp42 Protein protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66382
95 % 1 1 45813
90 % 1 1 43438
70 % 1 1 38134
50 % 1 1 32461
40 % 1 1 28656
30 % 1 1 24295

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures