Sequence Similarity Clusters for the Entities in PDB 1KG0

Entity #1 | Chains: A
MHC class II Receptor HLA-DR1 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 82 243
95 % 65 89 284
90 % 72 105 236
70 % 72 105 267
50 % 106 161 185
40 % 106 161 197
30 % 217 334 104
Entity #2 | Chains: B
MHC class II Receptor HLA-DR1 protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 38 678
95 % 32 41 763 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 63 84 329
70 % 106 159 156
50 % 106 161 186
40 % 106 161 198
30 % 218 334 104
Entity #3 | Chains: D
Hemagglutinin HA Peptide protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: C
gp42 Protein protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48215
95 % 1 1 48791
90 % 1 1 46326
70 % 1 1 40635
50 % 1 1 37569
40 % 1 1 32867
30 % 1 1 27486

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures