Sequence Similarity Clusters for the Entities in PDB 1KG0

Entity #1 | Chains: A
MHC class II Receptor HLA-DR1 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 71 230
95 % 55 78 295
90 % 62 94 237
70 % 62 94 270
50 % 92 146 177
40 % 92 146 193
30 % 189 304 100
Entity #2 | Chains: B
MHC class II Receptor HLA-DR1 protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 38 563
95 % 32 41 704 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 53 73 342
70 % 88 137 162
50 % 92 146 176
40 % 92 146 192
30 % 190 304 100
Entity #3 | Chains: D
Hemagglutinin HA Peptide protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: C
gp42 Protein protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64622
95 % 1 1 44559
90 % 1 1 42306
70 % 1 1 37265
50 % 1 1 31794
40 % 1 1 28085
30 % 1 1 23811

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.